Os02g0212400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0212400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 502.75 | 1.05 | 5.36 | 3.53 | 0.742 | -2.54 | 3.09 | -1.99 | 1.47 | 13.1 | 4.908 | 6026 | -- | -- |
| 505.96 | 1.05 | 5.28 | 3.95 | 0.75 | -2.4 | 3.1 | -- | 1.58 | 13.2 | 0.9619 | 6116 | -- | -- |
| 539.75 | 1.08 | 5.35 | 3.57 | 0.687 | -2.46 | -- | -2.13 | 1.44 | 11.8 | 14.7 | 5564 | -- | -- |
| 541.73 | 1.08 | 5.27 | 3.99 | 0.711 | -2.06 | -- | -- | 1.58 | 11.9 | 17.93 | 5824 | -- | -- |
| 566.63 | 1.11 | 5.38 | 3.5 | -- | -2.52 | -- | -2.39 | 1.37 | -- | 14.8 | 5387 | -- | -- |
| 604.76 | 1.15 | 5.4 | 2.78 | 0.791 | -- | 3.21 | -- | 1.04 | 13.1 | -- | -- | -- | -- |
| 646.41 | 1.19 | 5.39 | 2.89 | 0.794 | -- | -- | -- | 1.05 | 12.3 | -- | -- | -- | -- |
| 570.11 | 1.11 | 5.29 | 3.95 | -- | -2.14 | -- | -- | 1.55 | -- | 18.8 | 5399 | -- | -- |
| 838.64 | 1.35 | 5.49 | -- | 0.68 | -0.771 | -- | -- | 0.605 | 11.8 | 29.1 | 2953 | -- | -- |
| 686.07 | 1.22 | 5.41 | 2.87 | -- | -- | -- | -- | 1.04 | -- | -- | -- | -- | -- |
| 867.1 | 1.38 | 5.46 | -- | 0.754 | -- | -- | -- | 0.731 | 12.1 | -- | -- | -- | -- |
| 867.03 | 1.37 | 5.51 | -- | -- | -0.888 | -- | -- | 0.574 | -- | 28.98 | 2931 | -- | -- |
| 902.91 | 1.4 | 5.48 | -- | -- | -- | -- | -- | 0.723 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 492.75 | temperature | 20 | 14400 | < th | dose dependent | rect. | 4 | 18 |
| 7 | 493.23 | wind | 7 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 20 | 494.11 | temperature | 20 | 14400 | < th | dose dependent | sin | 0 | NA |
| 53 | 495.84 | wind | 5 | 14400 | > th | dose independent | rect. | 23 | 13 |
| 61 | 496.07 | temperature | 20 | 14400 | < th | dose dependent | rect. | 7 | 22 |
| 68 | 496.19 | temperature | 20 | 14400 | < th | dose dependent | sin | 17 | NA |
| 75 | 496.41 | temperature | 20 | 14400 | < th | dose dependent | no | NA | NA |
| 81 | 496.52 | temperature | 20 | 14400 | < th | dose dependent | rect. | 12 | 23 |
| 87 | 496.62 | temperature | 20 | 14400 | < th | dose dependent | rect. | 14 | 23 |
| 93 | 496.66 | temperature | 20 | 14400 | < th | dose dependent | rect. | 20 | 23 |
| 180 | 497.70 | wind | 5 | 14400 | > th | dose dependent | rect. | 24 | 10 |
| 204 | 497.99 | wind | 5 | 14400 | < th | dose independent | rect. | 23 | 13 |
| 233 | 498.45 | wind | 5 | 14400 | > th | dose independent | sin | 7 | NA |
| 246 | 498.66 | temperature | 20 | 14400 | < th | dose independent | rect. | 3 | 15 |
| 266 | 499.03 | temperature | 15 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 268 | 499.04 | temperature | 20 | 14400 | > th | dose independent | rect. | 3 | 15 |
| 277 | 499.12 | wind | 1 | 14400 | > th | dose independent | rect. | 3 | 2 |
| 305 | 499.50 | temperature | 30 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 308 | 499.56 | wind | 7 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 326 | 499.88 | temperature | 20 | 14400 | < th | dose independent | sin | 1 | NA |
| 352 | 500.23 | temperature | 20 | 14400 | > th | dose independent | sin | 1 | NA |
| 357 | 500.35 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 360 | 500.40 | wind | 7 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 383 | 500.67 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 398 | 500.80 | wind | 7 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 406 | 500.83 | wind | 5 | 14400 | > th | dose dependent | rect. | 21 | 15 |
| 419 | 500.94 | wind | 5 | 14400 | > th | dose dependent | sin | 8 | NA |
| 428 | 500.99 | wind | 7 | 14400 | > th | dose dependent | rect. | 6 | 4 |
| 433 | 501.02 | temperature | 25 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 440 | 501.06 | wind | 5 | 14400 | < th | dose independent | sin | 7 | NA |
| 478 | 501.33 | temperature | 10 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 516 | 501.49 | temperature | 30 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 517 | 501.50 | temperature | 10 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 540 | 501.59 | temperature | 30 | 14400 | < th | dose dependent | rect. | 4 | 5 |
| 635 | 501.91 | temperature | 15 | 14400 | > th | dose dependent | rect. | 16 | 19 |
| 650 | 501.94 | temperature | 10 | 14400 | > th | dose dependent | rect. | 16 | 17 |
| 698 | 502.03 | temperature | 30 | 14400 | < th | dose dependent | rect. | 16 | 17 |
| 699 | 502.03 | temperature | 30 | 14400 | < th | dose dependent | rect. | 16 | 19 |
| 769 | 502.12 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 13 |
| 793 | 502.15 | temperature | 15 | 14400 | > th | dose dependent | rect. | 3 | 19 |
| 796 | 502.16 | wind | 1 | 14400 | < th | dose independent | rect. | 3 | 2 |
| 875 | 502.28 | temperature | 25 | 14400 | > th | dose independent | rect. | 14 | 9 |
| 876 | 502.28 | temperature | 30 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 961 | 502.38 | temperature | 25 | 14400 | < th | dose independent | rect. | 14 | 10 |