Os02g0212300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os02g0212300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 228.97 | 0.711 | 5.76 | -1.33 | 0.591 | -0.204 | -1.75 | -12 | 0.0794 | 7.39 | 27.19 | 636 | -- | -- |
| 237.73 | 0.718 | 5.61 | -0.182 | 0.554 | -1.63 | -0.6 | -- | 0.233 | 8.9 | 28.13 | 271 | -- | -- |
| 235.21 | 0.714 | 5.74 | -1.2 | 0.633 | -0.192 | -- | -10.8 | 0.129 | 7.26 | 28 | 698 | -- | -- |
| 237.87 | 0.718 | 5.59 | -0.000725 | 0.59 | -1.63 | -- | -- | 0.309 | 9.18 | 27.67 | 258 | -- | -- |
| 247.82 | 0.733 | 5.68 | -0.597 | -- | -1.15 | -- | -6 | 0.225 | -- | 27.13 | 576 | -- | -- |
| 282.48 | 0.788 | 5.58 | -0.209 | 0.961 | -- | -0.137 | -- | 0.332 | 7.3 | -- | -- | -- | -- |
| 282.53 | 0.787 | 5.58 | -0.212 | 0.961 | -- | -- | -- | 0.332 | 7.29 | -- | -- | -- | -- |
| 251.24 | 0.738 | 5.61 | 0.0325 | -- | -1.79 | -- | -- | 0.299 | -- | 28.1 | 565 | -- | -- |
| 237.8 | 0.718 | 5.59 | -- | 0.588 | -1.67 | -- | -- | 0.312 | 9.34 | 27.8 | 258 | -- | -- |
| 331.5 | 0.851 | 5.6 | -0.195 | -- | -- | -- | -- | 0.348 | -- | -- | -- | -- | -- |
| 283.71 | 0.788 | 5.57 | -- | 0.959 | -- | -- | -- | 0.356 | 7.31 | -- | -- | -- | -- |
| 251.26 | 0.738 | 5.61 | -- | -- | -1.79 | -- | -- | 0.288 | -- | 28.13 | 566 | -- | -- |
| 332.5 | 0.851 | 5.6 | -- | -- | -- | -- | -- | 0.37 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 225.27 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 2 |
| 4 | 227.57 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 5 | 227.89 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 6 |
| 21 | 228.31 | temperature | 25 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 23 | 228.49 | temperature | 30 | 720 | > th | dose independent | sin | 6 | NA |
| 24 | 228.49 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 17 |
| 44 | 229.44 | temperature | 25 | 10 | > th | dose dependent | sin | 11 | NA |
| 64 | 230.03 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 65 | 230.11 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 12 |
| 66 | 230.18 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 15 |
| 68 | 230.25 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 9 |
| 69 | 230.27 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 5 |
| 72 | 230.28 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 12 |
| 76 | 230.33 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 9 |
| 79 | 230.43 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 5 |
| 90 | 230.65 | temperature | 30 | 720 | > th | dose dependent | sin | 6 | NA |
| 92 | 230.72 | temperature | 30 | 720 | > th | dose independent | rect. | 11 | 3 |
| 94 | 230.73 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 21 |
| 101 | 230.82 | temperature | 30 | 720 | > th | dose dependent | rect. | 8 | 7 |
| 123 | 230.95 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 23 |
| 142 | 231.37 | temperature | 25 | 720 | > th | dose dependent | rect. | 24 | 19 |
| 146 | 231.39 | temperature | 25 | 720 | > th | dose dependent | rect. | 5 | 14 |
| 151 | 231.42 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 23 |
| 187 | 231.65 | temperature | 30 | 720 | < th | dose independent | rect. | 4 | 8 |
| 235 | 231.86 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 5 |
| 275 | 232.03 | temperature | 25 | 4320 | > th | dose independent | sin | 12 | NA |
| 293 | 232.20 | temperature | 25 | 4320 | < th | dose independent | sin | 11 | NA |
| 370 | 232.57 | temperature | 30 | 720 | < th | dose independent | sin | 9 | NA |
| 490 | 233.01 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 551 | 233.39 | temperature | 30 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 555 | 233.42 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 2 |
| 591 | 233.73 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 23 |
| 610 | 233.89 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 23 |
| 619 | 233.94 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 8 |
| 623 | 233.97 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 630 | 234.12 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 632 | 234.13 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 807 | 234.49 | temperature | 30 | 270 | < th | dose independent | sin | 22 | NA |
| 819 | 234.60 | radiation | 20 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 829 | 234.63 | temperature | 30 | 270 | > th | dose independent | rect. | 11 | 23 |
| 949 | 234.85 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 14 |