Os02g0211500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os02g0211500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 288.17 | 0.798 | 3.83 | 0.782 | 0.738 | 2.4 | 1.23 | 1.45 | -0.112 | 21.7 | 1.116 | 1429 | -- | -- |
| 288.78 | 0.791 | 3.83 | 0.892 | 0.745 | 2.09 | 1.15 | -- | -0.101 | 21.7 | 1.58 | 1420 | -- | -- |
| 293.71 | 0.798 | 3.83 | 0.757 | 0.729 | 2.29 | -- | 1.08 | -0.115 | 21.6 | 1.216 | 1428 | -- | -- |
| 293.99 | 0.799 | 3.82 | 0.849 | 0.738 | 2.05 | -- | -- | -0.107 | 21.7 | 1.551 | 1420 | -- | -- |
| 309.42 | 0.819 | 3.81 | 0.713 | -- | 2.51 | -- | 1.08 | -0.115 | -- | 1.5 | 1504 | -- | -- |
| 342.24 | 0.867 | 3.87 | 0.425 | 0.692 | -- | 1.05 | -- | -0.369 | 21.3 | -- | -- | -- | -- |
| 346.17 | 0.871 | 3.88 | 0.387 | 0.687 | -- | -- | -- | -0.371 | 21.3 | -- | -- | -- | -- |
| 310.69 | 0.821 | 3.79 | 0.839 | -- | 2.4 | -- | -- | -0.0857 | -- | 1.718 | 1504 | -- | -- |
| 311.21 | 0.822 | 3.85 | -- | 0.684 | 1.71 | -- | -- | -0.175 | 21.6 | 1.997 | 1428 | -- | -- |
| 373.75 | 0.903 | 3.86 | 0.39 | -- | -- | -- | -- | -0.373 | -- | -- | -- | -- | -- |
| 350.11 | 0.875 | 3.88 | -- | 0.687 | -- | -- | -- | -0.414 | 21.4 | -- | -- | -- | -- |
| 327.16 | 0.842 | 3.82 | -- | -- | 2.03 | -- | -- | -0.2 | -- | 2.043 | 1516 | -- | -- |
| 377.77 | 0.907 | 3.87 | -- | -- | -- | -- | -- | -0.417 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 287.56 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 2 | 288.15 | radiation | 1 | 1440 | < th | dose dependent | sin | 1 | NA |
| 5 | 288.58 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 16 |
| 8 | 288.62 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 14 |
| 9 | 288.62 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 21 |
| 16 | 288.73 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 20 | 288.90 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 21 |
| 28 | 288.94 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 19 |
| 44 | 288.98 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 23 |
| 45 | 288.98 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 54 | 289.01 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 73 | 289.33 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 12 |
| 89 | 289.80 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 93 | 290.00 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 22 |
| 98 | 290.08 | radiation | 1 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 101 | 290.12 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 22 |
| 105 | 290.17 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 109 | 290.19 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 124 | 290.35 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 125 | 290.35 | radiation | 1 | 1440 | > th | dose independent | rect. | 4 | 15 |
| 173 | 290.39 | radiation | 1 | 1440 | < th | dose independent | rect. | 4 | 17 |
| 181 | 290.42 | radiation | 1 | 1440 | < th | dose independent | rect. | 24 | 21 |
| 183 | 290.43 | radiation | 1 | 1440 | < th | dose independent | rect. | 4 | 15 |
| 184 | 290.43 | radiation | 1 | 1440 | < th | dose independent | rect. | 4 | 22 |
| 195 | 290.46 | radiation | 1 | 1440 | < th | dose independent | rect. | 24 | 19 |
| 215 | 290.48 | radiation | 1 | 1440 | > th | dose independent | sin | 1 | NA |
| 225 | 290.49 | radiation | 1 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 230 | 290.51 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 254 | 290.59 | radiation | 1 | 1440 | < th | dose independent | sin | 1 | NA |
| 432 | 293.19 | radiation | 1 | 1440 | < th | dose dependent | sin | 14 | NA |
| 508 | 293.95 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 9 |
| 514 | 293.97 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 14 |
| 517 | 293.99 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 7 |
| 535 | 294.14 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 17 |
| 539 | 294.20 | wind | 7 | 43200 | > th | dose independent | rect. | 9 | 13 |
| 540 | 294.22 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 13 |
| 564 | 294.33 | radiation | 1 | 1440 | > th | dose independent | sin | 13 | NA |
| 597 | 294.49 | wind | 7 | 43200 | > th | dose independent | sin | 19 | NA |
| 623 | 294.55 | radiation | 1 | 1440 | < th | dose independent | sin | 13 | NA |
| 657 | 294.67 | wind | 7 | 43200 | < th | dose independent | sin | 19 | NA |
| 716 | 294.98 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 19 |
| 719 | 294.99 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 12 |
| 731 | 295.08 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 19 |
| 816 | 295.54 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 17 |
| 835 | 295.60 | wind | 3 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 871 | 295.72 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 23 |
| 872 | 295.73 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 15 |
| 884 | 295.78 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 23 |
| 896 | 295.82 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 15 |
| 947 | 295.99 | wind | 7 | 43200 | > th | dose independent | no | NA | NA |
| 970 | 296.07 | wind | 7 | 43200 | < th | dose independent | no | NA | NA |