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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0211200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.06 (0.03) R2 : 0.032
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.245 (0.0631) R2dN8 : 0.0414 R2N8 : 0.032
σ : 0.565
deviance : 146.33
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
134.49 0.545 3.04 -0.251 0.0245 -0.239 0.674 1.38 0.238 21.5 4.9 266 -- --
136.68 0.544 3.06 -0.193 0.0301 -0.523 0.55 -- 0.221 21.7 5.5 196 -- --
133.54 0.542 3.04 -0.29 0.083 -0.169 -- 1.35 0.239 22.2 4.999 230 -- --
137.83 0.547 3.06 -0.234 0.032 -0.523 -- -- 0.222 23.9 5.565 196 -- --
133.95 0.542 3.04 -0.292 -- -0.162 -- 1.33 0.239 -- 4.999 230 -- --
140.78 0.556 3.06 -0.326 0.0859 -- -0.73 -- 0.213 14.5 -- -- -- --
142.14 0.558 3.07 -0.345 0.137 -- -- -- 0.21 17.6 -- -- -- --
137.88 0.547 3.06 -0.23 -- -0.52 -- -- 0.223 -- 5.565 196 -- --
139.11 0.549 3.06 -- 0.0399 -0.601 -- -- 0.251 0.705 5.6 193 -- --
143.12 0.559 3.07 -0.349 -- -- -- -- 0.206 -- -- -- -- --
145.27 0.564 3.06 -- 0.143 -- -- -- 0.248 17.5 -- -- -- --
139.19 0.549 3.06 -- -- -0.587 -- -- 0.249 -- 5.581 196 -- --
146.33 0.565 3.06 -- -- -- -- -- 0.245 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 130.20 radiation 1.0 90 < th dose dependent rect. 14 3
3 130.71 radiation 1.0 90 < th dose independent rect. 14 2
9 131.14 radiation 1.0 10 < th dose dependent rect. 15 1
11 131.16 radiation 1.0 10 < th dose independent rect. 15 1
31 131.96 radiation 1.0 270 < th dose dependent rect. 7 9
32 132.14 precipitation 0.1 90 > th dose independent rect. 4 13
34 132.21 precipitation 0.1 30 > th dose independent rect. 4 10
39 132.22 humidity 60.0 90 > th dose dependent rect. 14 1
41 132.27 precipitation 0.1 30 > th dose dependent rect. 4 10
45 132.29 humidity 60.0 10 > th dose dependent rect. 14 2
58 132.48 wind 1.0 90 > th dose dependent rect. 4 1
59 132.49 precipitation 0.1 10 > th dose independent rect. 4 4
75 132.50 precipitation 0.1 30 > th dose dependent rect. 4 4
81 132.56 radiation 1.0 270 < th dose independent rect. 7 9
126 132.63 temperature 25.0 90 < th dose independent rect. 15 1
143 132.72 wind 3.0 90 > th dose independent rect. 4 1
144 132.72 temperature 30.0 720 < th dose independent rect. 14 1
155 132.86 wind 5.0 90 > th dose independent rect. 4 3
159 132.90 wind 1.0 30 > th dose dependent rect. 14 22
164 132.96 wind 3.0 10 > th dose independent rect. 6 1
172 133.02 wind 5.0 270 > th dose independent rect. 1 15
173 133.07 humidity 70.0 90 > th dose independent rect. 15 1
186 133.20 wind 1.0 90 > th dose dependent rect. 4 12
238 133.45 wind 9.0 43200 > th dose dependent rect. 19 20
240 133.46 wind 9.0 30 < th dose dependent rect. 5 23
242 133.49 wind 9.0 43200 < th dose independent rect. 6 9
246 133.51 radiation 1.0 10 < th dose independent rect. 4 13
250 133.53 wind 9.0 43200 < th dose independent rect. 22 17
265 133.58 wind 5.0 90 > th dose independent rect. 14 22
282 133.65 wind 9.0 43200 > th dose independent rect. 19 20
293 133.69 atmosphere 1005.0 90 > th dose independent rect. 14 2
295 133.69 wind 9.0 43200 > th dose independent rect. 5 10
296 133.69 wind 9.0 43200 < th dose independent rect. 19 20
306 133.72 wind 9.0 43200 > th dose dependent rect. 17 22
313 133.73 wind 9.0 43200 > th dose independent rect. 23 16
334 133.78 wind 3.0 270 > th dose dependent rect. 1 15
336 133.79 wind 3.0 30 > th dose independent rect. 14 2
352 133.85 humidity 90.0 270 > th dose dependent rect. 13 1
364 133.89 wind 1.0 43200 < th dose dependent rect. 23 5
381 133.94 wind 1.0 43200 < th dose dependent rect. 21 8
386 133.96 radiation 1.0 720 < th dose independent rect. 4 12
393 133.99 wind 9.0 43200 > th dose dependent rect. 8 7
394 133.99 wind 7.0 43200 > th dose dependent rect. 5 10
395 134.00 wind 9.0 43200 < th dose independent sin 5 NA
396 134.00 precipitation 0.1 720 > th dose independent rect. 4 10
398 134.00 wind 5.0 270 < th dose independent rect. 12 23
413 134.02 wind 5.0 270 < th dose independent rect. 23 23
414 134.02 precipitation 0.1 720 > th dose dependent rect. 4 10
428 134.07 precipitation 0.1 720 < th dose independent rect. 2 16
431 134.07 precipitation 0.1 720 < th dose dependent rect. 2 16
456 134.10 wind 7.0 43200 > th dose dependent rect. 24 15
469 134.12 temperature 30.0 10 < th dose dependent rect. 14 2
489 134.14 radiation 40.0 43200 > th dose dependent rect. 10 1
496 134.16 wind 9.0 43200 > th dose independent sin 6 NA
498 134.16 precipitation 0.1 720 > th dose independent rect. 3 15
526 134.19 radiation 1.0 10 < th dose independent rect. 6 1
535 134.20 radiation 1.0 720 > th dose independent rect. 18 19
538 134.20 radiation 1.0 720 < th dose dependent rect. 4 12
546 134.22 wind 9.0 43200 < th dose independent rect. 12 3
551 134.23 wind 7.0 43200 > th dose dependent sin 4 NA
560 134.25 wind 5.0 90 > th dose dependent rect. 14 1
561 134.25 humidity 50.0 270 > th dose dependent rect. 11 5
562 134.26 wind 1.0 14400 > th dose independent rect. 9 1
567 134.26 radiation 40.0 720 > th dose dependent rect. 10 1
570 134.27 temperature 20.0 10 < th dose dependent rect. 24 2
585 134.30 wind 5.0 30 < th dose independent rect. 5 23
599 134.31 precipitation 0.1 1440 > th dose dependent rect. 3 15
602 134.32 wind 9.0 43200 > th dose independent rect. 13 2
607 134.32 wind 9.0 43200 > th dose dependent rect. 22 23
630 134.35 precipitation 0.1 720 > th dose dependent sin 3 NA
643 134.36 wind 9.0 43200 > th dose dependent rect. 3 18
646 134.36 wind 9.0 43200 > th dose dependent rect. 24 21
648 134.36 wind 9.0 43200 > th dose dependent rect. 12 23
649 134.37 precipitation 0.1 270 > th dose independent rect. 14 2
650 134.37 precipitation 0.1 270 > th dose dependent rect. 14 2
657 134.38 wind 5.0 270 < th dose independent sin 4 NA
658 134.38 precipitation 0.1 720 < th dose independent sin 4 NA
662 134.38 precipitation 0.1 720 < th dose dependent sin 4 NA
663 134.38 wind 1.0 90 > th dose dependent rect. 14 2
683 134.39 wind 9.0 43200 > th dose dependent rect. 3 22
692 134.40 wind 9.0 43200 > th dose dependent no NA NA
728 134.43 wind 5.0 270 > th dose independent sin 3 NA
732 134.43 wind 1.0 43200 < th dose independent rect. 15 4
746 134.44 temperature 20.0 90 < th dose independent rect. 23 3
749 134.44 atmosphere 1000.0 30 > th dose dependent rect. 14 2
761 134.45 wind 1.0 43200 > th dose independent rect. 16 3
763 134.45 wind 9.0 43200 > th dose independent rect. 9 12
819 134.48 wind 9.0 43200 > th dose independent sin 21 NA
823 134.48 wind 9.0 43200 < th dose independent rect. 9 12
826 134.48 wind 9.0 43200 > th dose dependent rect. 12 3
844 134.49 wind 9.0 43200 < th dose independent rect. 6 15
859 134.50 radiation 1.0 720 > th dose independent rect. 5 8
881 134.51 radiation 1.0 270 < th dose independent rect. 19 21
894 134.52 precipitation 0.1 1440 < th dose independent rect. 4 14
901 134.52 precipitation 0.1 1440 < th dose dependent rect. 4 14
907 134.52 wind 9.0 43200 > th dose dependent rect. 10 23
912 134.53 wind 9.0 43200 > th dose independent rect. 10 15
921 134.54 wind 3.0 10 > th dose independent rect. 5 11
923 134.54 wind 9.0 43200 < th dose independent rect. 22 23
956 134.57 precipitation 0.1 720 > th dose independent rect. 5 1
961 134.57 wind 9.0 43200 > th dose independent rect. 5 16