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Os02g0209300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0563) R2 : 0.414
β1 : 0.542 (0.216) R2dD : 0.0118 R2D : 0.0475
β2 : 0.742 (0.131) R2dC : 0.041 R2C : 0.0311
β3 : 3.5 (0.305) R2dE : 0.434 R2E : -0.156
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -10.8 (0.99) R2dD*E : 0.322 R2D*E : -0.151
γ1 : 1.41 (0.117) R2dN8 : 0.297 R2N8 : -0.0517
σ : 0.946
deviance : 412.36
__
_____
C
peak time of C : 19
E
wheather : wind
threshold : 0.8476
memory length : 4305
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.03
open length of G : 1.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
415.7 0.958 10.9 0.698 0.748 3.28 -0.228 -10.5 1.41 19 0.9 4313 6.04 1.03
540.72 1.08 10.8 0.661 0.875 3.41 -0.359 -- 1.24 18.8 0.3891 4377 5.88 1.94
412.36 0.946 10.9 0.542 0.742 3.5 -- -10.8 1.41 19 0.8476 4305 6.03 1.1
516.39 1.06 10.8 1.61 0.611 1.92 -- -- 1.22 18.6 1.199 3749 5.86 1.98
440.33 0.977 10.9 0.491 -- 3.58 -- -11.2 1.39 -- 0.8252 4265 6.04 1.08
557.68 1.11 10.7 1.72 0.694 -- 0.034 -- 0.94 18.9 -- -- -- --
557.68 1.11 10.7 1.72 0.694 -- -- -- 0.94 18.9 -- -- -- --
529.8 1.07 10.7 1.27 -- 1.77 -- -- 1.09 -- 0.4464 4203 5.93 1.98
538.23 1.08 10.6 -- 0.633 2.46 -- -- 1.3 19.1 1.137 3730 5.57 2.32
582.94 1.13 10.7 1.7 -- -- -- -- 0.927 -- -- -- -- --
635.37 1.18 10.7 -- 0.675 -- -- -- 0.749 19.1 -- -- -- --
553.26 1.1 10.7 -- -- 2.59 -- -- 1.06 -- 0.2 4256 5.92 1.92
659.38 1.2 10.7 -- -- -- -- -- 0.738 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 425.56 wind 1.0 4320 < th dose dependent rect. 6 1
2 438.93 humidity 90.0 14400 < th dose independent rect. 6 1
3 440.13 humidity 90.0 14400 > th dose dependent rect. 6 1
4 441.68 humidity 90.0 14400 > th dose independent rect. 6 1
7 445.01 humidity 90.0 14400 > th dose dependent rect. 4 12
21 447.06 humidity 90.0 14400 > th dose dependent sin 2 NA
28 448.05 radiation 10.0 4320 > th dose dependent rect. 17 14
36 448.89 humidity 60.0 43200 > th dose independent rect. 20 13
39 449.04 humidity 60.0 43200 < th dose independent rect. 20 13
51 449.97 radiation 10.0 4320 > th dose dependent rect. 6 1
75 451.40 precipitation 0.1 43200 < th dose independent rect. 2 6
76 451.40 humidity 90.0 14400 > th dose independent rect. 1 15
77 451.40 precipitation 0.1 43200 < th dose dependent rect. 2 6
78 451.52 precipitation 0.1 43200 > th dose dependent rect. 2 6
80 451.53 precipitation 0.1 43200 > th dose independent rect. 2 6
96 452.25 wind 1.0 4320 < th dose independent rect. 6 1
105 452.59 humidity 70.0 43200 < th dose dependent rect. 22 10
109 452.83 wind 9.0 43200 < th dose dependent rect. 22 1
111 452.84 humidity 90.0 14400 < th dose independent rect. 23 18
116 452.98 humidity 70.0 43200 < th dose dependent rect. 21 12
134 453.57 wind 1.0 43200 > th dose dependent rect. 22 1
157 454.18 wind 3.0 43200 < th dose dependent rect. 22 2
180 454.80 wind 7.0 14400 > th dose dependent rect. 23 2
181 454.81 temperature 20.0 4320 > th dose dependent rect. 10 1
185 454.88 wind 1.0 4320 > th dose independent rect. 6 1
187 454.96 precipitation 0.1 43200 > th dose dependent rect. 23 9
189 455.08 precipitation 0.1 43200 < th dose independent rect. 23 9
190 455.08 precipitation 0.1 43200 < th dose dependent rect. 23 9
196 455.16 precipitation 0.1 43200 > th dose independent rect. 23 9
198 455.20 wind 1.0 43200 > th dose independent rect. 19 18
216 455.62 radiation 1.0 14400 > th dose independent rect. 6 10
218 455.71 wind 5.0 43200 < th dose dependent rect. 8 1
220 455.74 radiation 1.0 14400 < th dose independent rect. 6 10
225 455.86 radiation 1.0 14400 > th dose independent rect. 18 22
232 456.01 wind 1.0 43200 < th dose dependent rect. 4 21
233 456.02 radiation 1.0 14400 > th dose independent rect. 6 2
240 456.13 humidity 90.0 14400 > th dose independent sin 4 NA
241 456.13 radiation 1.0 14400 < th dose independent rect. 6 2
246 456.23 wind 3.0 43200 > th dose independent rect. 8 1
255 456.30 radiation 1.0 14400 > th dose independent rect. 4 12
271 456.45 radiation 1.0 14400 < th dose independent rect. 19 21
272 456.46 radiation 1.0 14400 < th dose independent rect. 4 12
275 456.48 radiation 1.0 14400 < th dose independent rect. 1 15
277 456.48 radiation 1.0 14400 < th dose independent rect. 22 18
292 456.70 wind 3.0 43200 < th dose independent rect. 10 1
296 456.79 wind 7.0 14400 > th dose independent rect. 23 2
325 457.12 atmosphere 1015.0 43200 > th dose independent rect. 16 8
343 457.30 wind 3.0 43200 < th dose independent rect. 8 1
349 457.33 wind 3.0 43200 < th dose dependent rect. 6 3
351 457.35 atmosphere 1015.0 43200 > th dose independent rect. 23 1
352 457.35 humidity 50.0 43200 > th dose dependent rect. 21 1
361 457.43 radiation 1.0 14400 > th dose independent rect. 18 19
369 457.46 atmosphere 1015.0 43200 < th dose independent rect. 15 9
374 457.52 radiation 1.0 14400 > th dose independent rect. 18 14
376 457.55 atmosphere 1015.0 43200 < th dose independent rect. 23 1
379 457.55 atmosphere 1015.0 43200 > th dose dependent rect. 23 1
380 457.55 wind 1.0 43200 > th dose dependent rect. 21 3
394 457.60 atmosphere 1015.0 43200 > th dose independent rect. 19 2
397 457.62 wind 1.0 43200 > th dose dependent rect. 8 1
424 457.79 humidity 60.0 43200 > th dose independent rect. 7 2
457 457.92 radiation 1.0 14400 > th dose independent sin 5 NA
485 458.07 precipitation 0.1 43200 > th dose independent rect. 7 1
492 458.08 wind 3.0 43200 > th dose independent rect. 10 1
505 458.12 radiation 1.0 14400 < th dose independent sin 5 NA
520 458.18 humidity 70.0 43200 < th dose independent rect. 15 17
529 458.24 precipitation 0.1 43200 < th dose independent rect. 7 1
530 458.24 radiation 1.0 14400 > th dose independent rect. 4 9
540 458.24 precipitation 0.1 43200 < th dose dependent rect. 7 1
546 458.26 precipitation 0.1 43200 > th dose dependent rect. 7 1
552 458.30 atmosphere 1015.0 43200 < th dose independent sin 14 NA
562 458.32 atmosphere 1015.0 43200 < th dose independent rect. 16 16
581 458.37 radiation 1.0 14400 < th dose independent rect. 4 9
593 458.39 humidity 90.0 43200 < th dose dependent rect. 21 1
620 458.43 wind 3.0 43200 < th dose independent rect. 20 3
626 458.44 wind 7.0 14400 < th dose independent rect. 23 2
640 458.49 atmosphere 1015.0 43200 > th dose independent sin 15 NA
641 458.49 humidity 90.0 14400 < th dose independent rect. 14 1
655 458.54 humidity 70.0 43200 < th dose independent sin 14 NA
690 458.60 radiation 10.0 4320 < th dose dependent rect. 18 11
712 458.66 atmosphere 1015.0 43200 < th dose independent rect. 6 1
722 458.70 atmosphere 1015.0 43200 > th dose independent rect. 16 16
725 458.72 radiation 1.0 14400 > th dose independent rect. 6 7
729 458.73 atmosphere 1015.0 43200 > th dose independent rect. 6 1
755 458.77 humidity 70.0 43200 > th dose independent rect. 15 17
761 458.79 radiation 1.0 14400 < th dose independent rect. 6 7
763 458.79 humidity 90.0 43200 < th dose dependent rect. 18 7
857 459.01 temperature 20.0 1440 > th dose independent rect. 6 1
875 459.08 wind 7.0 43200 > th dose independent rect. 18 1
880 459.08 temperature 30.0 4320 < th dose dependent rect. 10 1
901 459.13 radiation 1.0 14400 > th dose independent rect. 4 5
917 459.15 wind 3.0 43200 < th dose independent rect. 7 5
924 459.18 wind 3.0 43200 > th dose independent rect. 20 3
934 459.20 wind 3.0 43200 < th dose dependent rect. 5 7
935 459.21 humidity 70.0 43200 > th dose independent sin 14 NA
966 459.29 humidity 50.0 43200 > th dose dependent rect. 18 7
974 459.31 atmosphere 1015.0 43200 < th dose independent rect. 5 20
977 459.32 wind 3.0 43200 > th dose independent rect. 7 5
987 459.34 radiation 1.0 14400 < th dose independent rect. 19 14
992 459.35 radiation 1.0 14400 < th dose independent rect. 4 5
999 459.38 radiation 1.0 14400 < th dose independent rect. 1 8