FiT-DB / Search/ Help/ Sample detail

Os02g0208500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.45 (0.0643) R2 : 0.78
β1 : -7.94 (0.236) R2dD : 0.579 R2D : 0.481
β2 : 1.82 (0.16) R2dC : 0.0643 R2C : 0.0482
β3 : -5.22 (0.264) R2dE : 0.192 R2E : 0.142
β4 : 2.76 (0.67) R2dD*C : 0.00767 R2D*C : 0.0129
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.1 (0.138) R2dN8 : 0.042 R2N8 : -0.0319
σ : 1.2
deviance : 665.36
__
_____
C
peak time of C : 3.16
E
wheather : humidity
threshold : 55.31
memory length : 1308
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.37
open length of G : 17.8

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
664.68 1.21 8.46 -7.89 1.9 -5.12 2.77 -1.09 -1.12 3.2 55.87 1307 5.8 17.3
665.36 1.2 8.45 -7.94 1.82 -5.22 2.76 -- -1.1 3.16 55.31 1308 5.37 17.8
688.22 1.22 8.48 -7.94 1.93 -5.16 -- -0.834 -1.11 3.07 55.18 1307 5.65 17.5
687.18 1.22 8.48 -8.04 1.86 -5.33 -- -- -1.14 2.97 54.8 1311 5.23 17.9
799.69 1.32 8.46 -7.83 -- -5.37 -- -0.893 -1.06 -- 52 1266 5.69 24
1237.6 1.65 8.41 -7.66 1.88 -- 3.54 -- -0.89 3.35 -- -- -- --
1277.34 1.67 8.42 -7.72 1.89 -- -- -- -0.91 3.3 -- -- -- --
802.99 1.32 8.47 -7.97 -- -5.36 -- -- -1.1 -- 51 1262 5.72 24
1909.86 2.04 8.38 -- 1.73 -8.22 -- -- -0.734 3.32 32.34 47520 5.17 17.1
1479.22 1.8 8.42 -7.64 -- -- -- -- -0.861 -- -- -- -- --
2849.28 2.5 8.23 -- 1.74 -- -- -- -0.0503 3.3 -- -- -- --
2078.1 2.12 8.38 -- -- -8.21 -- -- -0.7 -- 33.78 47520 5.18 17
3019.98 2.57 8.23 -- -- -- -- -- -0.0127 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 695.28 humidity 50 1440 > th dose dependent rect. 6 17
22 699.33 humidity 50 1440 > th dose dependent sin 19 NA
30 700.11 humidity 80 1440 < th dose independent rect. 7 14
48 701.77 humidity 80 1440 > th dose independent rect. 6 15
50 701.82 humidity 50 1440 > th dose dependent rect. 10 13
76 703.51 humidity 90 1440 < th dose dependent rect. 3 20
94 704.60 humidity 90 1440 < th dose dependent rect. 11 22
139 706.91 humidity 50 1440 > th dose dependent rect. 10 23
142 706.96 humidity 90 1440 < th dose dependent rect. 13 21
184 708.61 humidity 50 1440 > th dose dependent rect. 13 10
209 709.52 humidity 90 1440 < th dose dependent rect. 16 23
216 709.68 humidity 50 1440 > th dose dependent no NA NA
227 710.04 humidity 90 1440 < th dose dependent sin 18 NA
232 710.20 humidity 90 1440 < th dose dependent no NA NA
306 713.42 humidity 50 1440 > th dose dependent rect. 16 23
318 713.79 humidity 90 1440 < th dose dependent rect. 10 13
375 715.99 humidity 50 1440 > th dose dependent rect. 15 6
394 716.91 humidity 90 1440 < th dose dependent rect. 10 18
446 719.09 humidity 90 1440 < th dose dependent rect. 13 10
480 721.18 humidity 90 1440 < th dose dependent rect. 15 6
520 723.18 humidity 80 1440 < th dose independent sin 0 NA
560 725.32 humidity 80 1440 > th dose independent sin 23 NA
851 740.69 humidity 90 1440 < th dose dependent rect. 16 1
895 742.89 humidity 50 1440 > th dose dependent rect. 16 1