Os02g0208100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chloroplast ADP,ATP carrier protein 2, chloroplast precursor (ADP/ATP translocase 2) (Adenine nucleotide translocase 2).
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Os02g0208100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Chloroplast ADP,ATP carrier protein 2, chloroplast precursor (ADP/ATP translocase 2) (Adenine nucleotide translocase 2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 94.57 | 0.457 | 8.2 | 2.26 | 1.65 | 1.55 | 0.334 | -1.07 | 0.581 | 18.2 | 24.08 | 956 | -- | -- |
| 96 | 0.456 | 8.22 | 2.1 | 1.63 | 1.68 | 0.394 | -- | 0.556 | 18.2 | 23.76 | 973 | -- | -- |
| 94.83 | 0.454 | 8.2 | 2.26 | 1.65 | 1.54 | -- | -1.09 | 0.582 | 18.2 | 24.1 | 943 | -- | -- |
| 96.27 | 0.457 | 8.22 | 2.09 | 1.66 | 1.71 | -- | -- | 0.544 | 18.3 | 23.8 | 947 | -- | -- |
| 227.91 | 0.703 | 8.14 | 2.38 | -- | 1.64 | -- | -1.58 | 0.642 | -- | 25.76 | 1265 | -- | -- |
| 135.4 | 0.546 | 8.29 | 1.61 | 1.64 | -- | 0.347 | -- | 0.226 | 17.8 | -- | -- | -- | -- |
| 135.69 | 0.546 | 8.29 | 1.61 | 1.64 | -- | -- | -- | 0.228 | 17.8 | -- | -- | -- | -- |
| 230.34 | 0.707 | 8.18 | 2.09 | -- | 1.79 | -- | -- | 0.565 | -- | 24.87 | 1249 | -- | -- |
| 196.31 | 0.653 | 8.31 | -- | 1.65 | 0.761 | -- | -- | 0.144 | 18 | 23.88 | 723 | -- | -- |
| 274.95 | 0.775 | 8.26 | 1.56 | -- | -- | -- | -- | 0.189 | -- | -- | -- | -- | -- |
| 203.78 | 0.668 | 8.33 | -- | 1.61 | -- | -- | -- | 0.0486 | 17.9 | -- | -- | -- | -- |
| 328.94 | 0.845 | 8.27 | -- | -- | 0.774 | -- | -- | 0.157 | -- | 25.2 | 1211 | -- | -- |
| 338.9 | 0.859 | 8.3 | -- | -- | -- | -- | -- | 0.0165 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.04 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 2 | 88.09 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 3 | 88.42 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 18 |
| 7 | 88.72 | temperature | 15 | 720 | > th | dose dependent | sin | 5 | NA |
| 17 | 89.54 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 57 | 91.41 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 19 |
| 71 | 91.81 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 10 |
| 152 | 93.50 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 14 |
| 161 | 93.69 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 17 |
| 175 | 93.91 | temperature | 25 | 720 | < th | dose dependent | sin | 3 | NA |
| 185 | 94.02 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 13 |
| 191 | 94.10 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 23 |
| 193 | 94.12 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 16 |
| 278 | 94.91 | temperature | 20 | 720 | > th | dose independent | sin | 4 | NA |
| 294 | 95.06 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 19 |
| 335 | 95.46 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 423 | 96.31 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 5 |
| 466 | 96.68 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 511 | 96.96 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 637 | 97.85 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 12 |
| 639 | 97.87 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 20 |
| 663 | 98.04 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 675 | 98.09 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 689 | 98.15 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 712 | 98.23 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 868 | 98.70 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 20 |
| 901 | 98.80 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |