Os02g0207500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os02g0207500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 133.56 | 0.543 | 9.56 | -2.21 | 1.72 | 2.18 | 0.0355 | -4.49 | -0.597 | 7.1 | 23.96 | 1440 | -- | -- |
| 138.99 | 0.549 | 9.45 | -0.985 | 1.72 | 1.93 | 0.00613 | -- | -0.384 | 7.34 | 22.15 | 1305 | -- | -- |
| 131.69 | 0.534 | 9.53 | -1.95 | 1.69 | 2.17 | -- | -3.62 | -0.583 | 7.27 | 23.4 | 1352 | -- | -- |
| 138.6 | 0.548 | 9.42 | -0.913 | 1.7 | 1.93 | -- | -- | -0.357 | 7.36 | 21.95 | 1307 | -- | -- |
| 283.81 | 0.785 | 9.57 | -1.91 | -- | 2.2 | -- | -3.44 | -0.56 | -- | 23.31 | 1362 | -- | -- |
| 264.53 | 0.762 | 9.33 | -0.263 | 1.77 | -- | 0.158 | -- | 0.0707 | 6.8 | -- | -- | -- | -- |
| 264.59 | 0.762 | 9.33 | -0.26 | 1.77 | -- | -- | -- | 0.0703 | 6.8 | -- | -- | -- | -- |
| 290.1 | 0.793 | 9.46 | -0.912 | -- | 1.93 | -- | -- | -0.328 | -- | 22.34 | 1367 | -- | -- |
| 159.56 | 0.588 | 9.39 | -- | 1.75 | 1.8 | -- | -- | -0.241 | 7.31 | 21.9 | 1300 | -- | -- |
| 427.68 | 0.966 | 9.36 | -0.221 | -- | -- | -- | -- | 0.105 | -- | -- | -- | -- | -- |
| 266.38 | 0.763 | 9.32 | -- | 1.76 | -- | -- | -- | 0.0993 | 6.81 | -- | -- | -- | -- |
| 310.13 | 0.82 | 9.43 | -- | -- | 1.7 | -- | -- | -0.179 | -- | 22.6 | 1362 | -- | -- |
| 428.97 | 0.967 | 9.36 | -- | -- | -- | -- | -- | 0.129 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 130.48 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 3 | 130.70 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 7 |
| 15 | 131.17 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 19 |
| 17 | 131.21 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 16 |
| 69 | 132.46 | temperature | 25 | 1440 | > th | dose dependent | sin | 17 | NA |
| 251 | 137.42 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 22 |
| 269 | 137.58 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 282 | 137.62 | temperature | 25 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 381 | 138.24 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 10 |
| 389 | 138.30 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 10 |
| 622 | 141.68 | temperature | 25 | 1440 | > th | dose independent | sin | 17 | NA |
| 653 | 141.99 | temperature | 25 | 1440 | < th | dose independent | sin | 17 | NA |
| 816 | 143.65 | temperature | 25 | 1440 | > th | dose independent | rect. | 5 | 19 |
| 822 | 143.67 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 18 |
| 907 | 144.80 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 925 | 144.93 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 6 |
| 935 | 145.01 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 961 | 145.37 | temperature | 25 | 1440 | < th | dose independent | rect. | 8 | 16 |
| 998 | 145.67 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 21 |