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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0207300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.24 (0.0544) R2 : 0.00208
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.111 (0.114) R2dN8 : 0.00268 R2N8 : 0.00208
σ : 1.02
deviance : 481.07
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
456.46 1 3.18 -0.309 0.233 0.4 -0.862 4.24 -0.0663 16.6 1.898e-05 3177 -- --
461.69 1 3.23 -0.347 0.182 0.957 -0.968 -- -0.0445 17.1 0.234 2488 -- --
457.9 0.997 3.17 -0.328 0.227 0.409 -- 4.14 -0.0814 15.3 0.00673 3176 -- --
463.43 1 3.22 -0.363 0.241 0.985 -- -- -0.0433 15.5 0.1 2488 -- --
461.18 1 3.18 -0.328 -- 0.452 -- 4.15 -0.0701 -- 0.1486 3176 -- --
475.77 1.02 3.24 -0.0596 0.19 -- -1.17 -- -0.109 17.2 -- -- -- --
478.45 1.02 3.24 -0.0574 0.209 -- -- -- -0.113 15 -- -- -- --
466.1 1.01 3.22 -0.366 -- 0.982 -- -- -0.0459 -- 0.2349 2488 -- --
466.49 1.01 3.22 -- 0.225 0.905 -- -- -0.00138 14.7 0.4972 2488 -- --
480.96 1.02 3.24 -0.0663 -- -- -- -- -0.119 -- -- -- -- --
478.54 1.02 3.24 -- 0.21 -- -- -- -0.107 15 -- -- -- --
469.15 1.01 3.22 -- -- 0.817 -- -- -0.0229 -- 0.1699 2488 -- --
481.07 1.02 3.24 -- -- -- -- -- -0.111 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 451.14 precipitation 0.1 4320 > th dose independent rect. 17 6
2 451.18 precipitation 0.1 4320 < th dose independent rect. 17 6
3 451.18 precipitation 0.1 4320 < th dose dependent rect. 17 6
4 451.23 precipitation 0.1 4320 < th dose independent rect. 17 8
5 451.23 precipitation 0.1 4320 < th dose dependent rect. 17 8
6 451.27 precipitation 0.1 4320 > th dose independent rect. 17 8
16 452.82 atmosphere 995.0 43200 < th dose dependent rect. 14 1
28 453.18 wind 1.0 10 > th dose dependent rect. 10 1
32 453.23 wind 9.0 270 > th dose dependent rect. 13 1
33 453.28 wind 9.0 270 > th dose independent rect. 13 1
36 453.30 atmosphere 995.0 43200 < th dose dependent rect. 13 3
41 453.43 atmosphere 995.0 43200 < th dose dependent rect. 12 5
44 453.47 atmosphere 995.0 43200 > th dose independent rect. 12 1
47 453.49 wind 1.0 1440 > th dose independent rect. 13 4
56 453.56 atmosphere 995.0 43200 < th dose dependent rect. 14 8
57 453.58 precipitation 0.1 4320 > th dose dependent rect. 17 7
59 453.63 atmosphere 995.0 43200 < th dose independent rect. 14 1
67 453.67 atmosphere 995.0 43200 < th dose independent rect. 12 3
83 453.94 atmosphere 995.0 43200 > th dose independent rect. 14 1
88 453.99 atmosphere 995.0 43200 > th dose independent rect. 12 3
97 454.12 atmosphere 995.0 43200 < th dose independent rect. 13 9
98 454.12 atmosphere 995.0 43200 > th dose independent rect. 12 10
105 454.18 wind 9.0 30 > th dose independent rect. 13 5
109 454.22 wind 9.0 270 > th dose independent rect. 12 3
113 454.28 precipitation 0.1 4320 < th dose independent rect. 12 13
115 454.28 radiation 1.0 43200 < th dose dependent rect. 1 3
116 454.28 precipitation 0.1 4320 < th dose dependent rect. 12 13
129 454.34 wind 9.0 270 > th dose dependent rect. 12 3
132 454.35 precipitation 0.1 4320 > th dose independent rect. 11 14
142 454.38 wind 1.0 1440 < th dose dependent rect. 14 1
166 454.48 wind 9.0 30 > th dose independent rect. 13 22
172 454.51 precipitation 0.1 4320 > th dose independent rect. 8 17
190 454.59 precipitation 0.1 4320 < th dose independent rect. 8 17
192 454.59 precipitation 0.1 4320 < th dose dependent rect. 8 17
235 454.73 atmosphere 995.0 43200 > th dose independent rect. 8 7
254 454.78 radiation 1.0 43200 < th dose dependent rect. 20 8
332 454.97 precipitation 0.1 4320 < th dose independent sin 16 NA
335 454.97 precipitation 0.1 4320 < th dose dependent sin 16 NA
340 454.99 atmosphere 995.0 43200 > th dose independent sin 21 NA
343 455.00 atmosphere 995.0 43200 < th dose independent sin 21 NA
356 455.03 precipitation 0.1 4320 > th dose independent sin 17 NA
404 455.29 wind 9.0 90 > th dose dependent rect. 12 5
433 455.49 precipitation 0.1 4320 > th dose dependent rect. 11 14
451 455.62 precipitation 0.1 4320 > th dose dependent rect. 8 17
478 455.78 wind 5.0 14400 < th dose independent rect. 20 1
484 455.81 wind 1.0 1440 < th dose independent rect. 13 4
491 455.85 precipitation 0.1 4320 > th dose dependent rect. 20 22
507 455.95 temperature 20.0 4320 > th dose independent rect. 24 1
508 455.95 temperature 20.0 4320 < th dose independent rect. 1 1
526 456.01 wind 1.0 1440 < th dose dependent rect. 13 4
564 456.12 wind 9.0 30 > th dose dependent rect. 13 22
570 456.15 radiation 20.0 1440 > th dose independent rect. 16 1
613 456.27 precipitation 0.1 4320 > th dose dependent sin 16 NA
637 456.37 precipitation 0.1 14400 < th dose independent rect. 19 3
639 456.37 precipitation 0.1 14400 < th dose dependent rect. 19 3
640 456.38 precipitation 0.1 14400 > th dose independent rect. 19 3
660 456.46 temperature 20.0 14400 > th dose independent rect. 21 1
681 456.54 radiation 1.0 43200 < th dose dependent rect. 20 4
693 456.61 wind 5.0 14400 > th dose independent rect. 20 1
704 456.65 temperature 20.0 14400 < th dose independent rect. 21 1
745 456.87 humidity 70.0 1440 < th dose independent rect. 18 2
766 456.93 wind 3.0 14400 > th dose dependent rect. 20 5
781 457.08 radiation 1.0 43200 < th dose dependent rect. 23 1
783 457.10 wind 1.0 1440 > th dose independent rect. 13 1
786 457.12 wind 1.0 720 < th dose dependent rect. 13 10
795 457.21 humidity 90.0 4320 < th dose independent rect. 18 1
796 457.21 humidity 70.0 1440 > th dose independent rect. 18 5
802 457.24 temperature 30.0 4320 < th dose independent rect. 15 1
805 457.26 wind 5.0 14400 < th dose independent rect. 18 19
810 457.27 precipitation 0.1 4320 > th dose dependent rect. 17 21
811 457.28 humidity 70.0 1440 > th dose independent rect. 18 8
829 457.32 precipitation 0.1 4320 < th dose independent rect. 17 17
830 457.32 wind 5.0 14400 > th dose independent rect. 18 19
834 457.32 precipitation 0.1 4320 < th dose dependent rect. 17 17
851 457.35 temperature 30.0 270 < th dose independent rect. 19 23
859 457.36 wind 3.0 14400 > th dose dependent rect. 20 2
870 457.40 precipitation 0.1 4320 > th dose independent rect. 17 17
872 457.40 precipitation 0.1 4320 > th dose independent rect. 17 20
881 457.43 precipitation 0.1 4320 < th dose independent rect. 17 20
887 457.43 precipitation 0.1 4320 < th dose dependent rect. 17 20
899 457.46 temperature 30.0 4320 > th dose independent rect. 15 1
910 457.48 wind 1.0 1440 < th dose independent rect. 13 1
924 457.52 precipitation 0.1 4320 > th dose dependent rect. 17 17
945 457.58 atmosphere 995.0 43200 < th dose independent rect. 18 1
952 457.58 atmosphere 995.0 43200 < th dose dependent rect. 18 1
965 457.61 wind 3.0 14400 > th dose dependent rect. 19 8
973 457.64 atmosphere 995.0 43200 > th dose independent rect. 18 3
985 457.67 atmosphere 995.0 43200 > th dose independent rect. 18 1
990 457.68 radiation 40.0 1440 > th dose independent rect. 15 1