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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0207100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to BCH1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.88 (0.0412) R2 : 0.391
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.4 (0.101) R2dC : 0.255 R2C : 0.26
β3 : 0.861 (0.125) R2dE : 0.0661 R2E : 0.0866
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.439 (0.0883) R2dN8 : 0.0441 R2N8 : 0.0592
σ : 0.769
deviance : 272.96
__
_____
C
peak time of C : 14.7
E
wheather : atmosphere
threshold : 1009
memory length : 19033
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
266.96 0.768 4.91 -0.437 1.39 0.829 0.906 1.1 -0.512 14.7 1010 18292 -- --
270.12 0.765 4.89 -0.0823 1.4 0.814 0.835 -- -0.458 14.7 1009 19024 -- --
269.8 0.765 4.91 -0.423 1.39 0.83 -- 1.12 -0.507 14.7 1010 18301 -- --
272.9 0.769 4.88 -0.0506 1.4 0.843 -- -- -0.442 14.7 1009 19033 -- --
381.95 0.91 4.92 -0.508 -- 0.898 -- 1.25 -0.521 -- 1009 18256 -- --
294.67 0.805 4.92 -0.384 1.42 -- 0.951 -- -0.611 14.7 -- -- -- --
297.81 0.808 4.91 -0.361 1.42 -- -- -- -0.605 14.7 -- -- -- --
384.69 0.913 4.87 0.048 -- 0.944 -- -- -0.44 -- 1009 24135 -- --
272.96 0.769 4.88 -- 1.4 0.861 -- -- -0.439 14.7 1009 19033 -- --
414.76 0.952 4.92 -0.422 -- -- -- -- -0.641 -- -- -- -- --
301.25 0.812 4.91 -- 1.42 -- -- -- -0.565 14.7 -- -- -- --
384.36 0.913 4.86 -- -- 1.06 -- -- -0.376 -- 1010 25461 -- --
419.45 0.956 4.91 -- -- -- -- -- -0.595 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 261.94 wind 1 43200 < th dose dependent rect. 6 2
2 262.60 humidity 90 14400 < th dose dependent rect. 2 1
4 262.92 humidity 90 14400 < th dose dependent rect. 1 3
9 263.24 humidity 60 43200 < th dose independent rect. 8 2
17 264.12 humidity 70 43200 > th dose independent rect. 8 1
19 264.29 wind 1 43200 < th dose independent rect. 6 2
21 264.32 radiation 10 43200 < th dose independent rect. 15 1
22 264.33 wind 9 43200 > th dose independent rect. 10 7
27 264.62 radiation 40 43200 > th dose independent rect. 11 2
32 264.81 humidity 80 14400 < th dose independent rect. 21 2
33 264.81 radiation 40 43200 > th dose independent rect. 11 22
34 264.84 radiation 30 43200 < th dose independent rect. 11 1
36 264.86 wind 9 43200 > th dose dependent rect. 14 3
39 264.88 radiation 40 43200 > th dose independent rect. 11 5
56 264.89 radiation 10 43200 < th dose dependent rect. 11 7
57 264.90 radiation 10 43200 < th dose dependent rect. 12 5
60 264.94 radiation 10 43200 < th dose dependent rect. 11 11
65 264.94 radiation 10 43200 < th dose dependent rect. 11 18
73 265.02 humidity 80 43200 > th dose dependent rect. 5 1
79 265.06 humidity 80 14400 > th dose independent rect. 21 6
85 265.07 humidity 60 14400 > th dose independent rect. 4 5
86 265.07 wind 9 43200 > th dose independent rect. 11 9
97 265.10 wind 9 43200 > th dose independent rect. 14 3
103 265.15 wind 1 43200 > th dose independent rect. 6 2
128 265.19 radiation 10 43200 < th dose dependent sin 19 NA
139 265.25 wind 9 43200 < th dose independent rect. 10 7
157 265.26 radiation 40 43200 > th dose independent sin 18 NA
164 265.31 wind 9 43200 < th dose independent rect. 15 2
169 265.33 radiation 40 43200 < th dose dependent rect. 11 18
174 265.35 wind 9 43200 > th dose independent rect. 11 1
176 265.35 humidity 70 43200 < th dose dependent rect. 8 1
177 265.35 radiation 40 43200 < th dose dependent rect. 11 10
188 265.36 radiation 30 43200 < th dose dependent sin 17 NA
189 265.36 radiation 40 43200 < th dose dependent rect. 11 8
191 265.36 radiation 1 43200 > th dose dependent rect. 11 18
193 265.37 radiation 1 43200 > th dose dependent rect. 11 8
234 265.42 humidity 60 14400 > th dose independent rect. 23 10
259 265.43 radiation 30 43200 > th dose independent rect. 15 21
306 265.46 radiation 1 43200 > th dose dependent sin 17 NA
344 265.51 radiation 30 43200 > th dose dependent rect. 11 3
351 265.54 humidity 50 14400 > th dose independent rect. 17 19
402 265.62 radiation 20 43200 > th dose dependent rect. 11 6
421 265.63 radiation 40 43200 > th dose independent no NA NA
422 265.63 humidity 50 43200 < th dose independent rect. 11 1
423 265.63 radiation 40 43200 > th dose independent rect. 8 8
602 265.65 humidity 80 14400 > th dose independent rect. 21 10
721 265.76 humidity 60 14400 < th dose dependent rect. 20 14
736 265.78 humidity 60 43200 < th dose dependent rect. 11 1
743 265.79 humidity 60 14400 < th dose dependent rect. 6 4
760 265.80 humidity 60 14400 < th dose dependent rect. 18 16
818 265.86 wind 9 43200 < th dose independent rect. 11 9
836 265.87 humidity 50 14400 < th dose independent rect. 17 19
850 265.88 humidity 50 14400 > th dose independent rect. 18 17
898 265.89 humidity 50 14400 < th dose dependent rect. 17 19
901 265.90 humidity 50 43200 > th dose independent rect. 11 1
985 265.97 radiation 40 43200 < th dose independent rect. 11 14
997 265.98 radiation 40 43200 < th dose independent rect. 11 6