Os02g0204100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0204100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.35 | 0.306 | 11 | 1.92 | 0.644 | -0.835 | 0.558 | 0.703 | 0.565 | 16 | 19.83 | 2509 | -- | -- |
| 42.83 | 0.305 | 11 | 1.84 | 0.671 | -0.846 | 0.513 | -- | 0.527 | 15.6 | 18.7 | 5697 | -- | -- |
| 43.23 | 0.306 | 11 | 1.91 | 0.642 | -0.831 | -- | 0.648 | 0.562 | 16.1 | 20.08 | 2511 | -- | -- |
| 43.15 | 0.306 | 11 | 1.85 | 0.666 | -0.804 | -- | -- | 0.587 | 15.7 | 18.95 | 7039 | -- | -- |
| 65.2 | 0.376 | 11 | 1.88 | -- | -0.917 | -- | 0.494 | 0.554 | -- | 20.52 | 2620 | -- | -- |
| 60.68 | 0.365 | 11 | 1.39 | 0.717 | -- | 0.585 | -- | 0.324 | 15.6 | -- | -- | -- | -- |
| 61.72 | 0.368 | 11 | 1.4 | 0.722 | -- | -- | -- | 0.327 | 15.6 | -- | -- | -- | -- |
| 65.49 | 0.377 | 11 | 1.75 | -- | -0.902 | -- | -- | 0.521 | -- | 20.26 | 2622 | -- | -- |
| 107.84 | 0.484 | 11.1 | -- | 0.632 | -0.34 | -- | -- | 0.138 | 16.1 | 28.52 | 1219 | -- | -- |
| 90.65 | 0.445 | 11 | 1.37 | -- | -- | -- | -- | 0.308 | -- | -- | -- | -- | -- |
| 113.55 | 0.498 | 11.1 | -- | 0.694 | -- | -- | -- | 0.171 | 15.7 | -- | -- | -- | -- |
| 130.25 | 0.532 | 11.1 | -- | -- | -0.451 | -- | -- | 0.103 | -- | 28.4 | 1228 | -- | -- |
| 140.31 | 0.553 | 11.1 | -- | -- | -- | -- | -- | 0.156 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.02 | temperature | 15 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 15 | 41.32 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 66 | 41.87 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 110 | 42.14 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 121 | 42.23 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 149 | 42.35 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 153 | 42.36 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 163 | 42.38 | radiation | 30 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 185 | 42.45 | temperature | 20 | 720 | > th | dose dependent | sin | 13 | NA |
| 188 | 42.45 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 205 | 42.48 | temperature | 20 | 4320 | > th | dose dependent | sin | 17 | NA |
| 232 | 42.54 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 239 | 42.56 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 252 | 42.58 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 276 | 42.60 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 10 |
| 291 | 42.62 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 301 | 42.63 | temperature | 15 | 4320 | > th | dose dependent | rect. | 8 | 14 |
| 323 | 42.65 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 3 |
| 425 | 42.73 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 9 |
| 437 | 42.74 | radiation | 30 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 455 | 42.74 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 20 |
| 459 | 42.74 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 22 |
| 484 | 42.76 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 2 |
| 564 | 42.80 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 585 | 42.80 | temperature | 20 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 635 | 42.82 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 712 | 42.86 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 2 |
| 759 | 42.89 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 811 | 42.91 | temperature | 25 | 4320 | < th | dose independent | rect. | 13 | 19 |
| 830 | 42.92 | temperature | 20 | 1440 | > th | dose dependent | sin | 5 | NA |
| 848 | 42.93 | temperature | 25 | 4320 | > th | dose independent | rect. | 13 | 19 |
| 877 | 42.95 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 935 | 42.98 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 1 |