Os02g0204000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os02g0204000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.18 | 0.279 | 9.92 | 0.264 | 0.936 | 0.714 | 0.104 | 0.0267 | 0.15 | 15.2 | 20.46 | 10 | -- | -- |
| 35.15 | 0.276 | 9.92 | 0.262 | 0.931 | 0.709 | 0.111 | -- | 0.148 | 15.2 | 21.1 | 10 | -- | -- |
| 35.18 | 0.276 | 9.92 | 0.281 | 0.937 | 0.698 | -- | 0.0988 | 0.159 | 15.2 | 21.1 | 12 | -- | -- |
| 35.18 | 0.276 | 9.92 | 0.259 | 0.932 | 0.716 | -- | -- | 0.149 | 15.2 | 21.1 | 19 | -- | -- |
| 66.99 | 0.381 | 9.95 | -0.0188 | -- | 1.59 | -- | -0.431 | -0.0202 | -- | 21.24 | 23 | -- | -- |
| 42.75 | 0.307 | 9.9 | 0.405 | 1.2 | -- | 0.301 | -- | 0.269 | 15 | -- | -- | -- | -- |
| 43.05 | 0.307 | 9.9 | 0.412 | 1.2 | -- | -- | -- | 0.271 | 15 | -- | -- | -- | -- |
| 66.55 | 0.38 | 9.94 | 0.105 | -- | 1.55 | -- | -- | 0.0456 | -- | 24.01 | 23 | -- | -- |
| 36.85 | 0.283 | 9.93 | -- | 0.9 | 0.822 | -- | -- | 0.105 | 15.2 | 19.55 | 24 | -- | -- |
| 125.44 | 0.523 | 9.9 | 0.36 | -- | -- | -- | -- | 0.24 | -- | -- | -- | -- | -- |
| 47.52 | 0.322 | 9.91 | -- | 1.19 | -- | -- | -- | 0.225 | 15 | -- | -- | -- | -- |
| 66.92 | 0.381 | 9.94 | -- | -- | 1.57 | -- | -- | 0.0454 | -- | 23.95 | 23 | -- | -- |
| 128.87 | 0.53 | 9.91 | -- | -- | -- | -- | -- | 0.2 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.64 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 19 |
| 5 | 31.85 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 21 |
| 9 | 32.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 20 |
| 10 | 32.10 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 17 | 32.28 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 18 | 32.29 | temperature | 30 | 90 | < th | dose dependent | rect. | 2 | 19 |
| 37 | 32.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 20 |
| 62 | 32.81 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 93 | 33.32 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 22 |
| 118 | 33.57 | temperature | 25 | 90 | < th | dose independent | rect. | 2 | 19 |
| 140 | 33.73 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 17 |
| 226 | 34.27 | temperature | 15 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 235 | 34.36 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 11 |
| 244 | 34.43 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 13 |
| 261 | 34.54 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 22 |
| 270 | 34.60 | radiation | 10 | 43200 | < th | dose dependent | rect. | 22 | 5 |
| 301 | 34.73 | radiation | 10 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 321 | 34.83 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 10 |
| 324 | 34.84 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 347 | 34.95 | temperature | 10 | 10 | > th | dose dependent | sin | 23 | NA |
| 360 | 34.99 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 387 | 35.08 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 391 | 35.10 | temperature | 25 | 90 | > th | dose independent | rect. | 6 | 18 |
| 409 | 35.14 | temperature | 30 | 10 | < th | dose dependent | sin | 23 | NA |
| 416 | 35.15 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 12 |
| 422 | 35.16 | temperature | 15 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 440 | 35.21 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 463 | 35.24 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 487 | 35.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 514 | 35.35 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 530 | 35.39 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 542 | 35.41 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 549 | 35.43 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 558 | 35.45 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 578 | 35.49 | radiation | 1 | 270 | < th | dose independent | rect. | 22 | 23 |
| 652 | 35.62 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 656 | 35.64 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 663 | 35.65 | humidity | 70 | 90 | > th | dose dependent | rect. | 11 | 10 |
| 664 | 35.65 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 13 |
| 683 | 35.69 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 8 |
| 689 | 35.70 | humidity | 80 | 10 | > th | dose independent | rect. | 2 | 19 |
| 693 | 35.71 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 696 | 35.71 | temperature | 10 | 720 | > th | dose dependent | sin | 2 | NA |
| 697 | 35.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 717 | 35.73 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 752 | 35.78 | humidity | 70 | 30 | > th | dose dependent | rect. | 2 | 19 |
| 785 | 35.82 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 1 |
| 802 | 35.84 | humidity | 70 | 90 | > th | dose dependent | rect. | 13 | 8 |
| 803 | 35.84 | humidity | 80 | 10 | > th | dose dependent | rect. | 10 | 11 |
| 820 | 35.85 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 845 | 35.88 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 9 |
| 847 | 35.88 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 14 |
| 852 | 35.88 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 20 |
| 871 | 35.91 | radiation | 1 | 270 | < th | dose independent | rect. | 8 | 10 |
| 874 | 35.91 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 6 |
| 952 | 36.00 | radiation | 10 | 270 | < th | dose dependent | rect. | 8 | 10 |
| 959 | 36.01 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 5 |
| 970 | 36.02 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 10 |
| 993 | 36.03 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 10 |