Os02g0203500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os02g0203500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 203.47 | 0.67 | 8.69 | 0.735 | 0.675 | 3.52 | 1.88 | 1.55 | -0.212 | 8.23 | 25.2 | 1436 | -- | -- |
| 205.36 | 0.667 | 8.65 | 1.04 | 0.669 | 3.46 | 1.85 | -- | -0.128 | 8.4 | 25.92 | 1517 | -- | -- |
| 213.86 | 0.681 | 8.69 | 0.794 | 0.675 | 3.53 | -- | 1.54 | -0.207 | 7.59 | 25.3 | 1367 | -- | -- |
| 215.85 | 0.684 | 8.65 | 1.08 | 0.679 | 3.4 | -- | -- | -0.131 | 8.07 | 25.8 | 1490 | -- | -- |
| 224.5 | 0.698 | 8.72 | 0.608 | -- | 3.26 | -- | 1.67 | -0.225 | -- | 26.61 | 611 | -- | -- |
| 360.77 | 0.89 | 8.82 | -0.018 | 0.646 | -- | 1.97 | -- | -0.874 | 8.71 | -- | -- | -- | -- |
| 373.53 | 0.905 | 8.82 | 0.0455 | 0.643 | -- | -- | -- | -0.874 | 8.59 | -- | -- | -- | -- |
| 228.14 | 0.703 | 8.68 | 0.922 | -- | 3.14 | -- | -- | -0.18 | -- | 27.24 | 580 | -- | -- |
| 241.33 | 0.724 | 8.7 | -- | 0.677 | 2.85 | -- | -- | -0.345 | 7.47 | 25.93 | 1340 | -- | -- |
| 396.8 | 0.931 | 8.84 | 0.0477 | -- | -- | -- | -- | -0.868 | -- | -- | -- | -- | -- |
| 373.58 | 0.904 | 8.82 | -- | 0.644 | -- | -- | -- | -0.879 | 8.58 | -- | -- | -- | -- |
| 246.09 | 0.731 | 8.74 | -- | -- | 2.9 | -- | -- | -0.441 | -- | 31.02 | 563 | -- | -- |
| 396.86 | 0.93 | 8.84 | -- | -- | -- | -- | -- | -0.873 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 191.29 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 21 | 192.65 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 2 |
| 32 | 193.01 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 8 |
| 35 | 193.25 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 56 | 193.62 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 88 | 194.01 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 154 | 194.76 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 248 | 196.00 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 416 | 198.47 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 609 | 201.37 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 849 | 203.66 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 941 | 204.39 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |