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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0203200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.74 (0.03) R2 : 0.498
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.813 (0.0806) R2dC : 0.133 R2C : 0.269
β3 : -1.4 (0.106) R2dE : 0.228 R2E : 0.363
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0886 (0.0633) R2dN8 : 0.00279 R2N8 : -0.000746
σ : 0.564
deviance : 146.71
__
_____
C
peak time of C : 14.6
E
wheather : temperature
threshold : 29.62
memory length : 259
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
132.02 0.54 3.77 0.336 0.844 -1.52 1.17 2.55 0.107 14.7 29.61 266 -- --
133.41 0.538 3.73 0.597 0.869 -1.26 1.01 -- 0.147 14.7 29.69 259 -- --
136.46 0.544 3.75 0.468 0.843 -1.47 -- 1.5 0.132 14.7 29.7 265 -- --
136.95 0.545 3.73 0.616 0.858 -1.3 -- -- 0.155 14.7 29.65 259 -- --
167.3 0.602 3.77 0.343 -- -1.81 -- 1.54 0.0292 -- 29.42 256 -- --
171.4 0.614 3.75 0.793 1.32 -- 1.57 -- 0.14 15.6 -- -- -- --
179 0.627 3.74 0.82 1.32 -- -- -- 0.149 15.5 -- -- -- --
167.4 0.603 3.76 0.524 -- -1.56 -- -- 0.00999 -- 29.08 252 -- --
146.71 0.564 3.74 -- 0.813 -1.4 -- -- 0.0886 14.6 29.62 259 -- --
276.94 0.778 3.74 0.764 -- -- -- -- 0.114 -- -- -- -- --
196.71 0.656 3.76 -- 1.31 -- -- -- 0.0577 15.5 -- -- -- --
174.53 0.615 3.78 -- -- -1.61 -- -- -0.0512 -- 29.01 254 -- --
292.34 0.798 3.76 -- -- -- -- -- 0.029 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 118.51 temperature 30 270 < th dose independent rect. 15 7
2 118.68 temperature 30 270 < th dose independent rect. 3 19
3 118.91 humidity 70 90 > th dose independent rect. 17 8
6 119.98 temperature 30 270 < th dose independent rect. 5 16
7 119.99 temperature 30 90 < th dose independent rect. 17 8
14 122.15 temperature 30 270 < th dose independent rect. 15 20
22 123.43 humidity 70 270 > th dose independent rect. 15 7
48 126.18 radiation 1 30 < th dose dependent rect. 17 8
50 126.26 radiation 1 90 < th dose independent rect. 16 9
62 127.12 humidity 70 90 > th dose independent sin 17 NA
64 127.26 humidity 70 270 > th dose independent rect. 15 19
69 127.34 humidity 50 90 > th dose dependent rect. 17 8
70 127.35 humidity 70 270 > th dose independent rect. 3 19
78 127.64 humidity 70 270 > th dose independent rect. 5 17
90 128.08 humidity 50 270 > th dose dependent rect. 15 7
167 130.24 radiation 1 30 < th dose dependent sin 17 NA
172 130.45 temperature 10 270 > th dose dependent rect. 9 8
174 130.48 humidity 70 90 < th dose independent sin 17 NA
176 130.53 humidity 50 270 > th dose dependent rect. 5 17
190 130.73 radiation 20 270 < th dose dependent rect. 15 7
203 130.87 temperature 30 270 > th dose independent rect. 11 7
212 131.01 temperature 30 270 > th dose independent rect. 12 5
220 131.09 radiation 1 90 > th dose independent sin 18 NA
238 131.25 radiation 1 30 > th dose independent sin 16 NA
240 131.33 radiation 10 270 < th dose independent rect. 15 7
246 131.43 humidity 70 270 < th dose independent rect. 10 9
248 131.45 humidity 50 270 > th dose independent rect. 14 23
255 131.58 humidity 70 270 < th dose independent rect. 10 22
275 131.68 humidity 70 90 > th dose independent rect. 11 14
284 131.81 radiation 1 90 < th dose independent sin 18 NA
303 131.86 humidity 70 270 < th dose independent sin 20 NA
358 132.43 temperature 10 270 > th dose dependent rect. 11 16
377 132.47 temperature 30 270 > th dose independent sin 21 NA
386 132.55 humidity 80 30 < th dose dependent sin 15 NA
436 132.90 humidity 90 270 < th dose dependent rect. 10 8
457 133.13 humidity 70 90 > th dose independent rect. 8 17
470 133.28 temperature 30 270 < th dose independent sin 23 NA
597 134.18 temperature 30 270 < th dose independent no NA NA
634 134.47 humidity 80 90 < th dose dependent rect. 12 8
640 134.55 radiation 10 270 < th dose dependent rect. 7 15
656 134.60 temperature 30 270 > th dose independent no NA NA
749 134.61 humidity 80 90 < th dose dependent rect. 12 20
780 134.81 humidity 80 90 < th dose dependent rect. 12 15
890 135.31 humidity 80 270 < th dose dependent rect. 10 21
897 135.33 humidity 80 270 < th dose dependent rect. 10 19
902 135.34 humidity 80 270 < th dose dependent rect. 10 17
948 135.60 temperature 30 270 > th dose independent rect. 16 23
949 135.60 humidity 80 270 < th dose dependent sin 21 NA
985 135.78 humidity 70 90 < th dose independent rect. 15 16