Os02g0202800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : FAR1 domain containing protein.
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Os02g0202800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : FAR1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.13 | 0.323 | 7.53 | 0.67 | 1.27 | -0.108 | 0.103 | 3.19 | 0.0685 | 12.1 | 7.129 | 6355 | -- | -- |
| 55.86 | 0.348 | 7.64 | 0.102 | 1.26 | -0.291 | 0.0389 | -- | -0.0771 | 12 | -2.101 | 29465 | -- | -- |
| 47.17 | 0.32 | 7.53 | 0.673 | 1.27 | -0.108 | -- | 3.18 | 0.0678 | 12.1 | 7.164 | 6320 | -- | -- |
| 54.93 | 0.345 | 7.65 | 0.0362 | 1.23 | -0.335 | -- | -- | -0.0944 | 12 | 10.09 | 9601 | -- | -- |
| 135.77 | 0.546 | 7.69 | -0.0484 | -- | 1.03 | -- | 2.59 | -0.258 | -- | 13.14 | 6563 | -- | -- |
| 57.18 | 0.355 | 7.67 | -0.172 | 1.27 | -- | 0.0639 | -- | -0.195 | 12 | -- | -- | -- | -- |
| 57.2 | 0.354 | 7.67 | -0.169 | 1.27 | -- | -- | -- | -0.195 | 12 | -- | -- | -- | -- |
| 141.45 | 0.556 | 7.73 | -0.405 | -- | 1.08 | -- | -- | -0.356 | -- | 3.846 | 25437 | -- | -- |
| 54.87 | 0.345 | 7.65 | -- | 1.25 | -0.355 | -- | -- | -0.0885 | 12 | 9.62 | 9488 | -- | -- |
| 158.22 | 0.588 | 7.7 | -0.209 | -- | -- | -- | -- | -0.213 | -- | -- | -- | -- | -- |
| 57.95 | 0.356 | 7.67 | -- | 1.27 | -- | -- | -- | -0.176 | 12 | -- | -- | -- | -- |
| 145.53 | 0.564 | 7.72 | -- | -- | 0.952 | -- | -- | -0.297 | -- | 3.846 | 25437 | -- | -- |
| 159.37 | 0.589 | 7.69 | -- | -- | -- | -- | -- | -0.189 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.89 | radiation | 20 | 14400 | < th | dose independent | rect. | 19 | 11 |
| 4 | 44.41 | humidity | 50 | 14400 | > th | dose independent | rect. | 19 | 11 |
| 7 | 45.44 | humidity | 90 | 43200 | < th | dose dependent | rect. | 8 | 5 |
| 22 | 45.57 | temperature | 15 | 90 | > th | dose dependent | rect. | 18 | 10 |
| 67 | 45.78 | humidity | 50 | 43200 | > th | dose dependent | rect. | 4 | 9 |
| 69 | 45.79 | humidity | 90 | 43200 | < th | dose dependent | sin | 1 | NA |
| 80 | 45.82 | humidity | 50 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 84 | 45.83 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 162 | 45.97 | humidity | 70 | 43200 | > th | dose independent | rect. | 2 | 14 |
| 207 | 46.04 | humidity | 50 | 43200 | > th | dose dependent | sin | 3 | NA |
| 254 | 46.10 | humidity | 70 | 43200 | < th | dose independent | rect. | 1 | 15 |
| 287 | 46.14 | humidity | 70 | 43200 | > th | dose independent | sin | 3 | NA |
| 450 | 46.28 | humidity | 70 | 43200 | < th | dose independent | sin | 4 | NA |
| 521 | 46.32 | humidity | 80 | 43200 | < th | dose independent | rect. | 4 | 7 |
| 547 | 46.33 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 16 |
| 678 | 46.40 | humidity | 80 | 43200 | < th | dose dependent | no | NA | NA |
| 716 | 46.42 | temperature | 30 | 90 | < th | dose independent | rect. | 17 | 12 |
| 721 | 46.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 18 |
| 729 | 46.42 | humidity | 80 | 43200 | < th | dose dependent | rect. | 17 | 23 |
| 769 | 46.44 | humidity | 80 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 951 | 46.52 | temperature | 30 | 720 | < th | dose dependent | sin | 17 | NA |
| 989 | 46.54 | humidity | 70 | 43200 | < th | dose independent | rect. | 8 | 22 |
| 992 | 46.54 | humidity | 70 | 43200 | > th | dose independent | rect. | 12 | 23 |