Os02g0201900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DEAD/DEAH box helicase domain containing protein.
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Os02g0201900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DEAD/DEAH box helicase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.79 | 0.219 | 9.09 | 0.0801 | 0.062 | -0.178 | -0.115 | 0.48 | -0.111 | 5.95 | 20.3 | 45 | -- | -- |
| 22.84 | 0.223 | 9.1 | -0.00637 | 0.0523 | -0.21 | -0.258 | -- | -0.131 | 4.91 | 20.24 | 74 | -- | -- |
| 21.73 | 0.217 | 9.08 | 0.103 | 0.0568 | -0.185 | -- | 0.474 | -0.118 | 5.15 | 20.54 | 74 | -- | -- |
| 22.86 | 0.223 | 9.1 | 0.0178 | 0.0449 | -0.262 | -- | -- | -0.131 | 4.42 | 19.4 | 137 | -- | -- |
| 21.87 | 0.218 | 9.09 | 0.0848 | -- | -0.191 | -- | 0.476 | -0.106 | -- | 20.6 | 73 | -- | -- |
| 24.58 | 0.232 | 9.11 | -0.0637 | 0.0884 | -- | -0.204 | -- | -0.169 | 3.79 | -- | -- | -- | -- |
| 24.7 | 0.233 | 9.11 | -0.0608 | 0.0869 | -- | -- | -- | -0.168 | 3.54 | -- | -- | -- | -- |
| 22.98 | 0.223 | 9.1 | 0.026 | -- | -0.273 | -- | -- | -0.125 | -- | 19.4 | 137 | -- | -- |
| 22.87 | 0.223 | 9.1 | -- | 0.0493 | -0.255 | -- | -- | -0.132 | 4.85 | 19.46 | 134 | -- | -- |
| 25.13 | 0.234 | 9.11 | -0.0571 | -- | -- | -- | -- | -0.166 | -- | -- | -- | -- | -- |
| 24.8 | 0.233 | 9.1 | -- | 0.0857 | -- | -- | -- | -0.161 | 3.55 | -- | -- | -- | -- |
| 23 | 0.223 | 9.1 | -- | -- | -0.266 | -- | -- | -0.129 | -- | 19.45 | 135 | -- | -- |
| 25.21 | 0.234 | 9.1 | -- | -- | -- | -- | -- | -0.159 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.90 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 3 | 20.94 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 21 |
| 5 | 20.98 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 6 | 21.00 | humidity | 80 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 7 | 21.03 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 12 | 21.09 | wind | 7 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 14 | 21.10 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 15 | 21.10 | humidity | 80 | 14400 | > th | dose dependent | rect. | 2 | 6 |
| 16 | 21.12 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 17 | 21.15 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 12 |
| 19 | 21.16 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 10 |
| 25 | 21.18 | wind | 7 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 27 | 21.19 | wind | 1 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 34 | 21.21 | wind | 5 | 14400 | < th | dose independent | rect. | 16 | 14 |
| 40 | 21.23 | wind | 5 | 14400 | < th | dose independent | rect. | 17 | 11 |
| 45 | 21.24 | wind | 5 | 14400 | > th | dose independent | rect. | 17 | 11 |
| 47 | 21.24 | wind | 5 | 14400 | > th | dose independent | rect. | 16 | 14 |
| 49 | 21.24 | humidity | 50 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 64 | 21.26 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 14 |
| 66 | 21.27 | humidity | 90 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 70 | 21.27 | wind | 5 | 14400 | < th | dose independent | rect. | 16 | 18 |
| 73 | 21.27 | wind | 5 | 14400 | > th | dose dependent | rect. | 16 | 11 |
| 82 | 21.28 | wind | 5 | 14400 | > th | dose independent | rect. | 16 | 18 |
| 88 | 21.29 | wind | 5 | 14400 | < th | dose independent | sin | 13 | NA |
| 90 | 21.29 | wind | 5 | 14400 | > th | dose independent | rect. | 17 | 7 |
| 91 | 21.29 | wind | 5 | 14400 | < th | dose independent | rect. | 17 | 7 |
| 97 | 21.29 | wind | 5 | 14400 | > th | dose dependent | rect. | 17 | 7 |
| 119 | 21.31 | wind | 5 | 14400 | > th | dose independent | sin | 13 | NA |
| 133 | 21.32 | temperature | 20 | 10 | > th | dose independent | rect. | 11 | 18 |
| 136 | 21.32 | radiation | 10 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 158 | 21.33 | wind | 3 | 14400 | > th | dose dependent | sin | 14 | NA |
| 165 | 21.33 | wind | 5 | 14400 | > th | dose dependent | rect. | 16 | 18 |
| 173 | 21.34 | humidity | 90 | 14400 | > th | dose dependent | sin | 3 | NA |
| 286 | 21.40 | temperature | 20 | 90 | > th | dose independent | rect. | 11 | 18 |
| 292 | 21.40 | temperature | 20 | 90 | > th | dose independent | rect. | 7 | 23 |
| 336 | 21.42 | humidity | 90 | 14400 | > th | dose independent | rect. | 1 | 12 |
| 510 | 21.46 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 14 |
| 562 | 21.47 | humidity | 70 | 43200 | > th | dose independent | rect. | 24 | 13 |
| 628 | 21.48 | wind | 5 | 14400 | > th | dose independent | rect. | 17 | 22 |
| 654 | 21.49 | humidity | 70 | 43200 | > th | dose independent | sin | 6 | NA |
| 659 | 21.49 | humidity | 60 | 43200 | > th | dose independent | rect. | 2 | 7 |
| 660 | 21.49 | humidity | 60 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 664 | 21.49 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 10 |
| 670 | 21.49 | humidity | 70 | 43200 | < th | dose independent | rect. | 24 | 13 |
| 690 | 21.49 | wind | 3 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 691 | 21.49 | wind | 7 | 43200 | < th | dose dependent | rect. | 21 | 3 |
| 692 | 21.49 | humidity | 90 | 43200 | < th | dose dependent | rect. | 5 | 5 |
| 709 | 21.49 | wind | 5 | 14400 | > th | dose dependent | rect. | 16 | 23 |
| 715 | 21.50 | humidity | 60 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 752 | 21.50 | wind | 5 | 14400 | < th | dose independent | rect. | 2 | 22 |
| 828 | 21.51 | wind | 5 | 14400 | > th | dose independent | rect. | 2 | 22 |
| 836 | 21.51 | humidity | 90 | 43200 | < th | dose dependent | rect. | 6 | 3 |
| 853 | 21.52 | wind | 5 | 14400 | < th | dose independent | no | NA | NA |
| 855 | 21.52 | humidity | 70 | 43200 | < th | dose independent | sin | 6 | NA |
| 856 | 21.52 | wind | 5 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 894 | 21.52 | temperature | 20 | 270 | > th | dose independent | rect. | 9 | 18 |
| 904 | 21.52 | wind | 5 | 14400 | < th | dose independent | rect. | 9 | 23 |
| 906 | 21.52 | wind | 1 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 922 | 21.53 | wind | 5 | 14400 | > th | dose independent | no | NA | NA |
| 927 | 21.53 | wind | 5 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 976 | 21.53 | wind | 5 | 14400 | > th | dose independent | rect. | 9 | 23 |
| 979 | 21.53 | wind | 5 | 14400 | < th | dose independent | rect. | 6 | 23 |