Os02g0201800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os02g0201800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 106.72 | 0.485 | 3.5 | 0.244 | 0.545 | 0.0549 | -0.587 | 3.34 | 0.133 | 5.2 | 0.3887 | 4645 | -- | -- |
| 106.65 | 0.481 | 3.56 | 0.143 | 0.512 | 0.909 | -0.502 | -- | 0.151 | 4.7 | 0.504 | 2766 | -- | -- |
| 105.85 | 0.479 | 3.49 | 0.357 | 0.545 | -0.0879 | -- | 3.82 | 0.146 | 5.06 | 0.5271 | 3055 | -- | -- |
| 107.1 | 0.482 | 3.57 | 0.073 | 0.54 | 1.01 | -- | -- | 0.162 | 4.89 | 0.5013 | 2769 | -- | -- |
| 121.01 | 0.512 | 3.5 | 0.372 | -- | -0.165 | -- | 4.23 | 0.142 | -- | 0.4992 | 3008 | -- | -- |
| 124.7 | 0.524 | 3.58 | 0.371 | 0.555 | -- | -0.454 | -- | 0.0874 | 5.08 | -- | -- | -- | -- |
| 125.22 | 0.524 | 3.58 | 0.371 | 0.552 | -- | -- | -- | 0.0895 | 5 | -- | -- | -- | -- |
| 122.09 | 0.515 | 3.57 | 0.0891 | -- | 1.01 | -- | -- | 0.164 | -- | 0.5 | 2720 | -- | -- |
| 107.15 | 0.482 | 3.56 | -- | 0.537 | 1.01 | -- | -- | 0.15 | 5.13 | 0.5 | 2769 | -- | -- |
| 141.23 | 0.555 | 3.59 | 0.391 | -- | -- | -- | -- | 0.104 | -- | -- | -- | -- | -- |
| 128.85 | 0.531 | 3.59 | -- | 0.559 | -- | -- | -- | 0.0482 | 4.98 | -- | -- | -- | -- |
| 122.28 | 0.515 | 3.57 | -- | -- | 1.05 | -- | -- | 0.157 | -- | 0.5 | 2718 | -- | -- |
| 145.26 | 0.563 | 3.6 | -- | -- | -- | -- | -- | 0.0602 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 100.66 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 3 | 101.95 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 4 | 102.01 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 6 | 102.50 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 12 | 103.18 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 13 | 103.18 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 18 | 103.33 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 22 | 103.41 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 25 | 103.56 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 28 | 103.70 | wind | 3.0 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 29 | 103.72 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 22 | 6 |
| 30 | 103.76 | wind | 3.0 | 14400 | < th | dose independent | rect. | 20 | 10 |
| 31 | 103.77 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 22 | 10 |
| 34 | 103.92 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 22 | 8 |
| 38 | 104.00 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 8 |
| 40 | 104.02 | wind | 3.0 | 14400 | > th | dose independent | rect. | 20 | 12 |
| 57 | 104.25 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 8 |
| 62 | 104.33 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 63 | 104.33 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 66 | 104.38 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 15 |
| 72 | 104.45 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 4 |
| 96 | 104.58 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 13 |
| 97 | 104.58 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 13 |
| 99 | 104.59 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 13 |
| 155 | 104.86 | wind | 3.0 | 14400 | < th | dose independent | sin | 10 | NA |
| 156 | 104.87 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 8 |
| 169 | 104.91 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 6 |
| 175 | 104.92 | wind | 3.0 | 14400 | < th | dose dependent | sin | 9 | NA |
| 186 | 104.97 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 14 | 3 |
| 188 | 104.97 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 14 | 3 |
| 197 | 105.01 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 230 | 105.12 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 3 |
| 231 | 105.13 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 14 | 3 |
| 242 | 105.15 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 281 | 105.26 | wind | 3.0 | 14400 | > th | dose independent | sin | 10 | NA |
| 289 | 105.28 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 8 |
| 294 | 105.29 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 0 | NA |
| 296 | 105.29 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 20 | 12 |
| 309 | 105.34 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 317 | 105.35 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 3 | 5 |
| 328 | 105.39 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 349 | 105.45 | radiation | 30.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 358 | 105.47 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 7 |
| 361 | 105.47 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 7 |
| 369 | 105.50 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 7 |
| 471 | 105.75 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 19 |
| 502 | 105.82 | wind | 3.0 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 506 | 105.82 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 623 | 106.09 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 639 | 106.11 | wind | 1.0 | 14400 | > th | dose dependent | sin | 10 | NA |
| 651 | 106.13 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 2 |
| 652 | 106.14 | wind | 3.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 693 | 106.24 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 715 | 106.28 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 718 | 106.29 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 19 |
| 719 | 106.29 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 19 |
| 721 | 106.29 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 19 |
| 722 | 106.30 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 23 | NA |
| 723 | 106.30 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 23 | NA |
| 737 | 106.32 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 23 | NA |
| 738 | 106.32 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 765 | 106.35 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 8 |
| 784 | 106.40 | wind | 3.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 871 | 106.59 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 2 |
| 900 | 106.64 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 946 | 106.73 | radiation | 20.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 991 | 106.82 | wind | 1.0 | 4320 | < th | dose independent | rect. | 18 | 1 |