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Os02g0200300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Beta-1,3-glucanase-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.55 (0.0214) R2 : 0.841
β1 : 1.16 (0.0781) R2dD : 0.0799 R2D : 0.0735
β2 : 2.08 (0.0545) R2dC : 0.523 R2C : 0.379
β3 : 1.72 (0.0543) R2dE : 0.358 R2E : 0.236
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.38 (0.0455) R2dN8 : 0.033 R2N8 : -0.00219
σ : 0.399
deviance : 73.31
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C
peak time of C : 20.3
E
wheather : radiation
threshold : 12.57
memory length : 16
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 0.0971
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
72.33 0.4 9.55 1.18 2.11 1.6 0.618 0.0944 0.379 20.6 11.43 15 23.5 --
72.1 0.395 9.54 1.17 2.07 1.69 0.613 -- 0.38 20.4 12.04 16 24 --
73.26 0.399 9.54 1.16 2.06 1.7 -- 0.112 0.387 20.3 12.48 16 0.149 --
73.31 0.399 9.55 1.16 2.08 1.72 -- -- 0.38 20.3 12.57 16 0.0971 --
111.84 0.495 9.49 1.19 -- 2.09 -- 0.58 0.347 -- 29.66 2 6.71 --
106.92 0.485 9.55 1.2 2.23 -- 0.588 -- 0.322 23 -- -- -- --
108.39 0.488 9.55 1.18 2.23 -- -- -- 0.32 23 -- -- -- --
108.33 0.487 9.5 1.18 -- 2.22 -- -- 0.322 -- 594.6 2 7.02 --
108.62 0.485 9.57 -- 2.08 1.64 -- -- 0.272 20.5 11.03 19 23.7 --
417.89 0.955 9.5 1.23 -- -- -- -- 0.336 -- -- -- -- --
144.99 0.563 9.58 -- 2.24 -- -- -- 0.189 23 -- -- -- --
144.98 0.563 9.53 -- -- 2.24 -- -- 0.19 -- 703.6 2 6.99 --
457.69 0.999 9.53 -- -- -- -- -- 0.2 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 73.55 radiation 10.0 10 < th dose dependent sin 5 NA
17 77.45 radiation 1.0 30 > th dose independent sin 4 NA
20 77.65 radiation 1.0 30 < th dose independent sin 4 NA
34 79.18 radiation 10.0 10 < th dose dependent rect. 24 17
41 79.92 radiation 10.0 90 < th dose dependent rect. 23 18
70 81.48 radiation 1.0 30 > th dose independent rect. 5 8
110 82.38 radiation 1.0 90 < th dose independent rect. 23 18
160 83.46 radiation 1.0 30 < th dose independent rect. 1 16
162 83.52 precipitation 0.1 270 < th dose independent rect. 3 8
163 83.52 precipitation 0.1 270 < th dose dependent rect. 3 8
182 83.71 radiation 1.0 30 > th dose dependent sin 9 NA
186 83.81 radiation 10.0 90 < th dose dependent rect. 23 12
188 83.85 precipitation 0.1 270 < th dose independent rect. 15 8
189 83.85 precipitation 0.1 270 < th dose dependent rect. 15 8
191 83.91 radiation 1.0 270 > th dose independent sin 11 NA
192 83.91 radiation 1.0 270 < th dose independent sin 11 NA
251 84.56 radiation 1.0 90 < th dose independent rect. 23 9
278 84.73 precipitation 0.1 270 < th dose independent rect. 17 16
279 84.73 precipitation 0.1 270 < th dose dependent rect. 17 16
295 85.06 atmosphere 995.0 270 > th dose independent rect. 23 16
297 85.08 humidity 50.0 270 > th dose dependent rect. 11 17
302 85.14 precipitation 0.1 270 < th dose independent rect. 4 18
303 85.14 precipitation 0.1 270 < th dose dependent rect. 4 18
310 85.23 wind 9.0 270 < th dose dependent rect. 4 7
318 85.34 temperature 10.0 10 > th dose dependent rect. 5 19
319 85.35 humidity 50.0 10 > th dose dependent rect. 13 16
326 85.46 wind 9.0 270 < th dose independent rect. 15 8
327 85.46 humidity 50.0 270 > th dose independent rect. 23 16
328 85.49 temperature 10.0 270 > th dose independent rect. 15 8
329 85.49 temperature 10.0 270 > th dose independent rect. 23 16
330 85.51 wind 9.0 270 < th dose independent rect. 23 16
332 85.53 atmosphere 1015.0 270 < th dose independent rect. 23 16
334 85.61 radiation 40.0 270 < th dose independent rect. 15 8
343 85.73 precipitation 0.1 270 < th dose independent rect. 3 20
345 85.73 precipitation 0.1 270 < th dose dependent rect. 3 20
348 85.75 radiation 1.0 270 < th dose independent rect. 21 21
352 85.78 precipitation 0.1 270 < th dose independent rect. 16 18
356 85.78 precipitation 0.1 270 < th dose dependent rect. 16 18
360 85.83 wind 1.0 270 > th dose independent rect. 15 8
362 85.84 radiation 40.0 10 < th dose independent rect. 12 17
377 86.00 wind 9.0 270 < th dose independent rect. 3 8
378 86.00 temperature 10.0 270 > th dose independent rect. 3 8
379 86.00 atmosphere 995.0 270 > th dose independent rect. 3 8
380 86.00 atmosphere 1015.0 270 < th dose independent rect. 3 8
381 86.00 temperature 10.0 270 > th dose independent rect. 11 16
385 86.05 atmosphere 995.0 270 > th dose independent rect. 11 16
387 86.07 humidity 90.0 10 < th dose dependent sin 9 NA
390 86.08 precipitation 0.1 270 < th dose independent rect. 5 16
391 86.08 precipitation 0.1 270 < th dose dependent rect. 5 16
392 86.09 radiation 1.0 270 < th dose independent rect. 21 11
404 86.19 temperature 10.0 10 > th dose dependent rect. 5 8
415 86.26 wind 9.0 270 < th dose independent rect. 11 16
454 86.47 radiation 1.0 30 < th dose independent rect. 1 7
478 86.51 humidity 50.0 10 > th dose dependent rect. 24 17
494 86.61 humidity 50.0 270 > th dose independent rect. 3 8
520 86.78 radiation 1.0 270 < th dose dependent rect. 21 9
528 86.83 radiation 1.0 270 < th dose dependent rect. 21 11
548 86.93 humidity 50.0 270 > th dose independent rect. 11 17
565 87.06 precipitation 0.1 4320 > th dose dependent rect. 12 5
573 87.09 wind 1.0 14400 < th dose independent rect. 4 2
578 87.11 temperature 10.0 270 > th dose independent rect. 4 6
579 87.11 atmosphere 995.0 270 > th dose independent rect. 4 6
580 87.11 atmosphere 1015.0 270 < th dose independent rect. 4 6
581 87.11 temperature 10.0 270 > th dose independent rect. 10 18
590 87.15 wind 9.0 270 < th dose independent rect. 4 6
597 87.17 wind 1.0 14400 > th dose independent rect. 3 3
603 87.21 humidity 50.0 270 > th dose independent rect. 4 6
606 87.21 temperature 10.0 270 > th dose dependent rect. 4 18
611 87.26 wind 9.0 270 < th dose independent rect. 10 18
620 87.28 precipitation 0.1 4320 > th dose dependent rect. 9 8
648 87.36 precipitation 0.1 4320 > th dose independent rect. 12 5
652 87.38 temperature 10.0 270 > th dose dependent rect. 4 6
654 87.38 humidity 80.0 10 > th dose dependent rect. 6 23
712 87.62 temperature 30.0 270 < th dose independent rect. 23 16
713 87.62 wind 3.0 14400 < th dose dependent rect. 2 3
714 87.62 humidity 50.0 270 > th dose dependent rect. 21 7
737 87.73 precipitation 0.1 4320 < th dose independent rect. 13 4
739 87.73 precipitation 0.1 4320 < th dose dependent rect. 13 4
747 87.74 humidity 80.0 270 > th dose independent rect. 22 6
779 87.83 temperature 10.0 270 > th dose independent rect. 22 6
780 87.83 temperature 30.0 270 < th dose independent rect. 22 6
781 87.83 humidity 50.0 270 > th dose independent rect. 22 6
784 87.83 atmosphere 995.0 270 > th dose independent rect. 22 6
785 87.83 radiation 1.0 270 < th dose independent rect. 22 6
801 87.83 temperature 10.0 270 > th dose independent rect. 4 18
802 87.83 radiation 1.0 270 < th dose dependent rect. 22 6
808 87.84 wind 9.0 270 < th dose independent rect. 22 6
848 87.98 precipitation 0.1 10 < th dose independent rect. 5 8
850 87.98 precipitation 0.1 10 < th dose dependent rect. 5 8
866 88.00 wind 9.0 270 < th dose independent rect. 4 18
870 88.03 wind 1.0 90 > th dose independent rect. 1 16
878 88.06 humidity 60.0 10 > th dose dependent sin 8 NA
909 88.13 humidity 80.0 10 > th dose independent rect. 24 17
942 88.22 atmosphere 995.0 10 > th dose independent rect. 13 16
964 88.28 precipitation 0.1 14400 < th dose independent rect. 17 1
965 88.28 precipitation 0.1 14400 < th dose dependent rect. 17 1
967 88.29 atmosphere 1015.0 270 < th dose independent rect. 22 6
979 88.33 precipitation 0.1 270 < th dose independent rect. 23 16
980 88.33 precipitation 0.1 270 < th dose dependent rect. 23 16
985 88.36 temperature 10.0 10 > th dose independent rect. 5 8
987 88.36 atmosphere 995.0 10 > th dose independent rect. 5 8
988 88.36 atmosphere 1015.0 10 < th dose independent rect. 5 8
989 88.36 temperature 10.0 10 > th dose independent rect. 13 16