Os02g0199900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 26S proteasome regulatory complex subunit p42D.
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Os02g0199900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 26S proteasome regulatory complex subunit p42D.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.35 | 0.222 | 12.6 | 0.0346 | 1.28 | 0.332 | -0.116 | -0.717 | 0.0748 | 16.4 | 29.26 | 1419 | -- | -- |
| 23.47 | 0.226 | 12.6 | 0.0197 | 1.28 | 0.323 | -0.166 | -- | 0.0735 | 16.4 | 29.28 | 1446 | -- | -- |
| 22.39 | 0.22 | 12.6 | 0.0353 | 1.28 | 0.333 | -- | -0.72 | 0.0748 | 16.4 | 29.26 | 1419 | -- | -- |
| 23.5 | 0.226 | 12.6 | 0.000774 | 1.27 | 0.333 | -- | -- | 0.0494 | 16.4 | 29.27 | 1442 | -- | -- |
| 108.68 | 0.486 | 12.6 | 0.0849 | -- | 0.461 | -- | -0.802 | 0.0533 | -- | 26.38 | 1309 | -- | -- |
| 26.74 | 0.242 | 12.7 | -0.0612 | 1.3 | -- | -0.119 | -- | -0.0122 | 16.3 | -- | -- | -- | -- |
| 26.78 | 0.242 | 12.7 | -0.0623 | 1.3 | -- | -- | -- | -0.0128 | 16.3 | -- | -- | -- | -- |
| 109.91 | 0.488 | 12.6 | -0.00465 | -- | 0.475 | -- | -- | 0.0648 | -- | 27.12 | 1322 | -- | -- |
| 23.48 | 0.226 | 12.6 | -- | 1.28 | 0.313 | -- | -- | 0.0517 | 16.4 | 29.28 | 1436 | -- | -- |
| 117.63 | 0.507 | 12.6 | -0.114 | -- | -- | -- | -- | -0.0473 | -- | -- | -- | -- | -- |
| 26.88 | 0.243 | 12.7 | -- | 1.3 | -- | -- | -- | -0.0059 | 16.3 | -- | -- | -- | -- |
| 109.89 | 0.488 | 12.6 | -- | -- | 0.482 | -- | -- | 0.0615 | -- | 27.4 | 1320 | -- | -- |
| 117.97 | 0.507 | 12.6 | -- | -- | -- | -- | -- | -0.0347 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.33 | radiation | 30 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 9 | 21.79 | radiation | 40 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 11 | 21.83 | radiation | 30 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 16 | 21.88 | radiation | 30 | 1440 | < th | dose independent | rect. | 24 | 14 |
| 25 | 21.89 | radiation | 30 | 1440 | < th | dose independent | rect. | 17 | 21 |
| 56 | 22.00 | radiation | 10 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 73 | 22.14 | radiation | 1 | 1440 | > th | dose dependent | rect. | 9 | 4 |
| 101 | 22.19 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 11 |
| 111 | 22.24 | radiation | 30 | 1440 | < th | dose independent | sin | 2 | NA |
| 141 | 22.31 | radiation | 40 | 1440 | < th | dose dependent | rect. | 1 | 13 |
| 194 | 22.36 | wind | 9 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 311 | 22.42 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 396 | 22.44 | radiation | 30 | 1440 | < th | dose independent | no | NA | NA |
| 588 | 22.51 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 11 |
| 615 | 22.52 | radiation | 30 | 1440 | < th | dose dependent | sin | 3 | NA |
| 620 | 22.53 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 669 | 22.57 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 21 |
| 778 | 22.59 | temperature | 10 | 10 | > th | dose dependent | rect. | 3 | 11 |
| 818 | 22.61 | radiation | 1 | 1440 | > th | dose dependent | sin | 3 | NA |
| 835 | 22.62 | radiation | 40 | 720 | < th | dose dependent | rect. | 5 | 3 |