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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0199800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to No pollen.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.97 (0.0392) R2 : 0.402
β1 : -1.65 (0.145) R2dD : 0.179 R2D : 0.0938
β2 : 1.3 (0.135) R2dC : 0.253 R2C : -0.315
β3 : 2.56 (0.174) R2dE : 0.61 R2E : -0.0467
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.421 (0.0849) R2dN8 : 0.0464 R2N8 : -0.026
σ : 0.732
deviance : 247.32
__
_____
C
peak time of C : 11
E
wheather : temperature
threshold : 8.723
memory length : 219
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 11.7
open length of G : 17.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
245.66 0.736 4.97 -1.71 1.22 2.64 -1.02 -0.722 -0.443 11 8.485 268 11.1 17.8
245.92 0.73 4.97 -1.64 1.25 2.65 -0.685 -- -0.419 11 7.974 263 11.1 17.7
247.62 0.733 4.96 -1.62 1.28 2.64 -- 0.471 -0.426 11 8.392 261 11.3 17.6
247.32 0.732 4.97 -1.65 1.3 2.56 -- -- -0.421 11 8.723 219 11.7 17.1
267.39 0.762 5.02 -1.77 -- 1.93 -- -1.05 -0.481 -- 19.8 159 11.7 17.9
334.18 0.857 4.96 -1.31 0.739 -- 1.04 -- -0.194 18.3 -- -- -- --
336.42 0.859 4.96 -1.32 0.75 -- -- -- -0.189 17.9 -- -- -- --
268.21 0.763 5 -1.62 -- 1.85 -- -- -0.454 -- 19.44 159 11.7 17.9
314.46 0.826 4.92 -- 1.28 2.11 -- -- -0.232 11.6 4.137 186 12.2 16.9
365.58 0.893 4.95 -1.35 -- -- -- -- -0.206 -- -- -- -- --
382.57 0.915 4.92 -- 0.77 -- -- -- -0.0418 17.8 -- -- -- --
336.2 0.854 4.95 -- -- 1.63 -- -- -0.259 -- 20.11 151 12 17.5
413.35 0.949 4.91 -- -- -- -- -- -0.0571 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 246.14 temperature 10.0 270 > th dose dependent rect. 11 18
15 254.59 temperature 30.0 270 < th dose independent rect. 16 8
23 256.89 humidity 60.0 270 > th dose independent rect. 16 8
52 261.31 temperature 15.0 10 > th dose dependent rect. 13 17
54 261.45 humidity 50.0 270 > th dose dependent rect. 16 7
55 261.65 temperature 30.0 270 < th dose dependent rect. 16 7
84 263.77 radiation 20.0 270 < th dose dependent rect. 16 8
103 265.05 temperature 30.0 270 < th dose independent rect. 17 17
109 265.39 radiation 10.0 270 < th dose independent rect. 16 8
111 265.43 humidity 60.0 270 > th dose independent rect. 17 17
120 265.82 precipitation 0.1 270 < th dose independent rect. 11 18
121 265.82 precipitation 0.1 270 < th dose dependent rect. 11 18
143 267.02 temperature 10.0 270 > th dose dependent rect. 22 8
151 267.39 radiation 1.0 270 > th dose independent rect. 10 19
155 267.52 radiation 1.0 270 > th dose independent rect. 10 9
168 267.63 humidity 50.0 270 > th dose independent rect. 6 16
169 267.66 wind 7.0 270 < th dose independent rect. 12 17
170 267.73 temperature 30.0 90 < th dose dependent rect. 17 10
175 267.92 humidity 50.0 270 > th dose independent rect. 5 18
218 269.42 temperature 15.0 270 > th dose independent rect. 5 7
222 269.52 wind 5.0 270 < th dose independent rect. 22 8
258 270.28 precipitation 0.1 270 < th dose independent rect. 10 8
259 270.28 precipitation 0.1 270 < th dose dependent rect. 10 8
282 270.87 wind 9.0 270 < th dose independent rect. 10 8
285 270.94 wind 1.0 270 > th dose independent rect. 10 8
299 271.19 precipitation 0.1 270 < th dose independent rect. 24 17
300 271.19 precipitation 0.1 270 < th dose dependent rect. 24 17
301 271.24 temperature 15.0 270 > th dose independent rect. 12 17
302 271.26 temperature 25.0 720 > th dose dependent sin 13 NA
303 271.29 atmosphere 995.0 270 > th dose dependent rect. 17 6
307 271.41 atmosphere 995.0 270 > th dose independent rect. 18 16
310 271.50 humidity 50.0 270 > th dose independent rect. 5 6
311 271.51 wind 9.0 270 < th dose independent rect. 24 16
317 271.60 atmosphere 995.0 270 > th dose independent rect. 17 7
323 271.69 precipitation 0.1 270 < th dose independent rect. 5 6
324 271.69 precipitation 0.1 270 < th dose dependent rect. 5 6
326 271.71 atmosphere 995.0 270 > th dose independent rect. 5 6
327 271.71 atmosphere 1015.0 270 < th dose independent rect. 5 6
328 271.71 atmosphere 1010.0 270 < th dose independent rect. 22 8
335 271.84 wind 9.0 270 < th dose dependent rect. 22 8
345 271.98 temperature 30.0 10 < th dose dependent rect. 17 10
346 272.00 temperature 25.0 720 > th dose dependent rect. 16 13
350 272.06 radiation 1.0 270 < th dose dependent sin 20 NA
351 272.07 atmosphere 995.0 270 > th dose independent rect. 24 16
352 272.09 temperature 15.0 270 > th dose independent rect. 22 8
353 272.10 wind 9.0 270 < th dose independent rect. 5 6
362 272.18 radiation 1.0 270 < th dose independent sin 19 NA
368 272.30 atmosphere 1015.0 270 < th dose independent rect. 24 16
373 272.33 temperature 10.0 270 > th dose independent rect. 16 8
374 272.33 radiation 40.0 270 < th dose independent rect. 16 8
375 272.33 temperature 10.0 270 > th dose independent rect. 24 16
397 272.59 precipitation 0.1 270 < th dose independent rect. 22 8
398 272.59 precipitation 0.1 270 < th dose dependent rect. 22 8
406 272.72 temperature 10.0 270 > th dose independent rect. 10 8
407 272.72 atmosphere 1015.0 270 < th dose independent rect. 10 8
408 272.72 temperature 10.0 270 > th dose independent rect. 18 16
409 272.75 humidity 70.0 10 > th dose independent rect. 18 9
413 272.85 temperature 10.0 270 > th dose dependent rect. 10 8
426 273.10 wind 9.0 270 < th dose independent rect. 18 16
459 273.54 wind 9.0 270 < th dose independent rect. 17 7
493 274.03 radiation 1.0 270 < th dose independent rect. 6 17
511 274.25 temperature 30.0 270 < th dose independent rect. 22 8
512 274.25 humidity 50.0 270 > th dose independent rect. 22 8
515 274.25 atmosphere 995.0 270 > th dose independent rect. 22 8
516 274.25 radiation 20.0 270 < th dose independent rect. 22 8
519 274.25 temperature 10.0 270 > th dose independent rect. 6 16
528 274.37 radiation 1.0 270 > th dose independent sin 20 NA
532 274.43 radiation 40.0 270 < th dose dependent rect. 22 8
544 274.55 temperature 20.0 270 > th dose independent rect. 10 8
587 274.93 wind 1.0 270 > th dose independent rect. 17 7
622 275.24 radiation 1.0 270 < th dose independent rect. 5 19
646 275.37 humidity 50.0 270 > th dose independent rect. 15 21
704 275.70 radiation 1.0 270 < th dose dependent rect. 6 17
708 275.73 temperature 25.0 1440 > th dose dependent rect. 16 2
721 275.78 atmosphere 995.0 270 > th dose independent rect. 17 18
739 275.89 temperature 30.0 720 < th dose independent rect. 16 3
746 275.93 radiation 1.0 270 < th dose dependent rect. 23 15
875 276.60 wind 1.0 270 > th dose independent rect. 12 16
957 277.22 atmosphere 1015.0 270 < th dose independent rect. 11 18