FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0199700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.31 (0.0407) R2 : 0.764
β1 : 1.32 (0.152) R2dD : 0.0422 R2D : 0.0589
β2 : 3.65 (0.103) R2dC : 0.764 R2C : 0.434
β3 : 1.86 (0.098) R2dE : 0.223 R2E : -0.0901
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 2.14 (0.374) R2dD*E : 0.0182 R2D*E : -0.0169
γ1 : -0.695 (0.0867) R2dN8 : 0.0448 R2N8 : 0.0442
σ : 0.751
deviance : 260.06
__
_____
C
peak time of C : 12.2
E
wheather : temperature
threshold : 20.4
memory length : 303
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 9.87
open length of G : 15.8

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
257.34 0.754 6.31 1.26 3.7 1.89 0.988 2.33 -0.692 12.1 20.1 285 9.99 16
276.77 0.775 6.37 1.08 3.64 1.75 0.29 -- -0.777 12.3 20.13 288 10.2 15.8
260.06 0.751 6.31 1.32 3.65 1.86 -- 2.14 -0.695 12.2 20.4 303 9.87 15.8
276.68 0.775 6.36 1.13 3.64 1.7 -- -- -0.764 12.3 20.2 289 10.2 15.6
665.38 1.21 6.46 0.809 -- 2.06 -- -0.747 -0.918 -- 26.92 15 10.8 17.6
337.24 0.861 6.36 1.5 3.32 -- 0.354 -- -0.588 14.1 -- -- -- --
337.71 0.861 6.36 1.51 3.32 -- -- -- -0.586 14.1 -- -- -- --
643.63 1.18 6.49 0.852 -- 1.94 -- -- -0.946 -- 26.4 12 10.8 18.6
308.47 0.818 6.39 -- 3.79 1.87 -- -- -0.861 12.2 19.92 280 10.3 15.7
998.21 1.48 6.39 1.37 -- -- -- -- -0.665 -- -- -- -- --
397.66 0.933 6.4 -- 3.29 -- -- -- -0.754 14.1 -- -- -- --
665.1 1.2 6.49 -- -- 2.06 -- -- -1.07 -- 26.31 11 10.8 19.3
1047.67 1.51 6.43 -- -- -- -- -- -0.817 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 259.28 temperature 20.0 270 > th dose independent rect. 10 16
2 259.80 humidity 50.0 270 > th dose independent rect. 15 6
7 265.09 humidity 50.0 270 > th dose independent rect. 15 18
11 267.43 temperature 10.0 270 > th dose dependent rect. 10 16
17 268.44 radiation 40.0 270 < th dose dependent rect. 15 6
21 268.66 temperature 30.0 270 < th dose independent rect. 15 6
23 268.90 radiation 20.0 270 < th dose independent rect. 15 6
28 270.65 temperature 30.0 270 < th dose independent rect. 16 4
29 270.69 wind 1.0 270 > th dose independent rect. 15 7
34 271.06 wind 9.0 270 < th dose independent rect. 22 17
36 271.39 atmosphere 995.0 270 > th dose independent rect. 22 17
38 271.46 temperature 10.0 270 > th dose independent rect. 15 7
39 271.46 temperature 10.0 270 > th dose independent rect. 22 17
40 271.64 atmosphere 1015.0 270 < th dose independent rect. 22 17
45 272.47 temperature 20.0 270 > th dose independent rect. 20 7
46 272.49 humidity 50.0 270 > th dose independent rect. 5 15
48 272.77 temperature 30.0 270 < th dose independent rect. 16 17
52 273.35 wind 9.0 270 < th dose independent rect. 15 7
71 274.55 radiation 1.0 270 < th dose dependent rect. 20 11
72 274.59 precipitation 0.1 270 < th dose independent rect. 22 17
73 274.59 precipitation 0.1 270 < th dose dependent rect. 22 17
75 274.63 wind 7.0 270 < th dose independent rect. 9 7
89 275.26 precipitation 0.1 270 < th dose independent rect. 15 7
90 275.26 precipitation 0.1 270 < th dose dependent rect. 15 7
95 275.72 wind 7.0 270 < th dose independent rect. 11 15
104 275.96 humidity 50.0 270 > th dose independent rect. 14 21
115 276.23 atmosphere 995.0 270 > th dose independent rect. 15 7
118 276.29 wind 1.0 270 > th dose dependent rect. 15 7
122 276.56 humidity 50.0 270 > th dose independent rect. 22 17
127 276.67 atmosphere 1015.0 270 < th dose independent rect. 15 6
132 276.83 atmosphere 995.0 270 > th dose independent rect. 16 5
151 277.19 humidity 50.0 270 > th dose dependent rect. 16 4
155 277.33 atmosphere 995.0 270 > th dose dependent rect. 15 6
158 277.42 radiation 1.0 90 < th dose independent sin 20 NA
163 277.57 wind 9.0 270 < th dose dependent rect. 11 15
167 277.77 precipitation 0.1 270 < th dose independent rect. 2 9
168 277.77 precipitation 0.1 270 < th dose dependent rect. 2 9
182 278.08 radiation 1.0 270 > th dose independent rect. 9 7
183 278.11 humidity 50.0 270 > th dose dependent rect. 20 8
186 278.19 temperature 10.0 270 > th dose dependent rect. 20 8
190 278.32 humidity 80.0 270 > th dose independent rect. 21 7
192 278.35 humidity 50.0 270 > th dose dependent rect. 17 2
196 278.48 radiation 1.0 270 < th dose independent rect. 20 11
201 278.64 temperature 10.0 10 > th dose dependent rect. 12 16
210 279.02 humidity 70.0 10 > th dose independent rect. 17 5
212 279.03 temperature 10.0 270 > th dose independent rect. 9 7
213 279.03 atmosphere 1015.0 270 < th dose independent rect. 9 7
214 279.03 temperature 10.0 270 > th dose independent rect. 16 17
224 279.23 precipitation 0.1 270 < th dose independent rect. 9 7
226 279.23 precipitation 0.1 270 < th dose dependent rect. 9 7
233 279.41 temperature 30.0 90 < th dose dependent rect. 16 7
257 279.94 radiation 1.0 30 < th dose dependent sin 19 NA
263 280.20 wind 9.0 270 < th dose independent rect. 16 17
272 280.38 precipitation 0.1 270 < th dose independent rect. 16 17
273 280.38 precipitation 0.1 270 < th dose dependent rect. 16 17
288 280.73 atmosphere 995.0 270 > th dose independent rect. 9 7
301 280.96 precipitation 0.1 270 < th dose independent rect. 11 15
303 280.96 precipitation 0.1 270 < th dose dependent rect. 11 15
313 281.17 temperature 10.0 270 > th dose independent rect. 2 9
314 281.17 atmosphere 995.0 270 > th dose independent rect. 2 9
315 281.17 atmosphere 1015.0 270 < th dose independent rect. 2 9
316 281.17 temperature 10.0 270 > th dose independent rect. 11 15
335 281.32 temperature 20.0 10 > th dose independent rect. 12 16
336 281.36 atmosphere 995.0 270 > th dose independent rect. 16 17
346 281.45 wind 9.0 270 < th dose independent rect. 2 9
362 281.82 humidity 50.0 270 > th dose independent rect. 2 9
371 281.96 radiation 40.0 270 < th dose independent rect. 16 17
382 282.22 radiation 40.0 270 < th dose dependent rect. 16 17
407 282.54 wind 1.0 270 > th dose independent rect. 9 7
441 282.95 temperature 10.0 270 > th dose independent rect. 20 9
442 282.95 temperature 30.0 270 < th dose independent rect. 20 9
443 282.95 humidity 50.0 270 > th dose independent rect. 20 9
446 282.95 atmosphere 995.0 270 > th dose independent rect. 20 9
447 282.95 radiation 20.0 270 < th dose independent rect. 20 9
450 282.95 temperature 10.0 270 > th dose independent rect. 5 15
451 282.95 atmosphere 1015.0 270 < th dose independent rect. 5 15
454 282.98 wind 9.0 270 < th dose independent rect. 20 9
460 283.03 radiation 40.0 270 < th dose dependent rect. 20 9
480 283.28 radiation 1.0 90 > th dose independent sin 20 NA
485 283.34 radiation 1.0 90 > th dose independent rect. 11 18
486 283.35 radiation 1.0 90 > th dose independent rect. 11 8
509 283.55 radiation 1.0 90 < th dose independent rect. 8 15
512 283.57 radiation 1.0 270 > th dose independent rect. 10 5
514 283.58 humidity 50.0 10 > th dose dependent rect. 17 5
524 283.65 humidity 80.0 10 > th dose independent rect. 22 8
530 283.67 temperature 10.0 270 > th dose dependent rect. 9 7
595 284.41 wind 9.0 270 < th dose dependent rect. 20 8
642 284.91 temperature 10.0 270 > th dose independent rect. 10 5
643 284.91 atmosphere 1015.0 270 < th dose independent rect. 10 5
644 284.91 temperature 10.0 270 > th dose independent rect. 15 19
669 285.08 precipitation 0.1 270 < th dose independent rect. 10 5
670 285.08 precipitation 0.1 270 < th dose dependent rect. 10 5
673 285.13 atmosphere 995.0 270 > th dose independent rect. 10 5
721 285.44 temperature 30.0 10 < th dose dependent rect. 17 5
749 285.60 temperature 10.0 270 > th dose dependent rect. 10 5
757 285.63 precipitation 0.1 270 < th dose independent rect. 5 15
759 285.63 precipitation 0.1 270 < th dose dependent rect. 5 15
767 285.70 precipitation 0.1 270 < th dose independent rect. 20 9
768 285.70 precipitation 0.1 270 < th dose dependent rect. 20 9
771 285.73 radiation 1.0 14400 < th dose dependent rect. 19 7
806 286.01 precipitation 0.1 270 < th dose independent rect. 15 19
807 286.01 precipitation 0.1 270 < th dose dependent rect. 15 19
850 286.46 temperature 10.0 270 > th dose dependent rect. 21 18
875 286.65 atmosphere 1010.0 270 < th dose independent rect. 21 7
885 286.75 wind 9.0 270 < th dose independent rect. 15 19
930 286.96 temperature 10.0 270 > th dose dependent rect. 20 20
937 287.01 wind 1.0 270 > th dose independent rect. 10 5