Os02g0198600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DNA-damage inducible protein DDI1-like.
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Os02g0198600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DNA-damage inducible protein DDI1-like.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.46 | 0.211 | 11.1 | -0.256 | 0.491 | -0.357 | 0.087 | 3.76 | 0.0212 | 23.1 | 1000 | 10 | -- | -- |
| 20.53 | 0.213 | 11 | -0.0214 | 0.497 | 0.265 | 0.128 | -- | 0.0125 | 23.1 | 1002 | 181 | -- | -- |
| 20.47 | 0.211 | 11.1 | -0.259 | 0.491 | -0.36 | -- | 3.79 | 0.0207 | 23.1 | 1000 | 50 | -- | -- |
| 20.6 | 0.213 | 11 | -0.0267 | 0.497 | 0.264 | -- | -- | 0.0121 | 23.1 | 1002 | 181 | -- | -- |
| 35.37 | 0.279 | 11.1 | -0.414 | -- | -0.786 | -- | 6.31 | 0.0236 | -- | 1000 | 5 | -- | -- |
| 23.24 | 0.226 | 11 | -0.0586 | 0.501 | -- | 0.116 | -- | 0.0415 | 23.2 | -- | -- | -- | -- |
| 23.3 | 0.226 | 11 | -0.0634 | 0.5 | -- | -- | -- | 0.0411 | 23.2 | -- | -- | -- | -- |
| 35.5 | 0.279 | 11 | 0.000112 | -- | 0.324 | -- | -- | 0.0174 | -- | 1001 | 31 | -- | -- |
| 20.61 | 0.213 | 11 | -- | 0.496 | 0.267 | -- | -- | 0.0147 | 23.1 | 1002 | 181 | -- | -- |
| 38.92 | 0.292 | 11 | -0.0514 | -- | -- | -- | -- | 0.0453 | -- | -- | -- | -- | -- |
| 23.41 | 0.226 | 11 | -- | 0.5 | -- | -- | -- | 0.0481 | 23.1 | -- | -- | -- | -- |
| 35.5 | 0.278 | 11 | -- | -- | 0.324 | -- | -- | 0.0174 | -- | 1001 | 31 | -- | -- |
| 38.99 | 0.291 | 11 | -- | -- | -- | -- | -- | 0.0511 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.65 | wind | 1 | 14400 | < th | dose independent | rect. | 9 | 3 |
| 2 | 19.67 | wind | 1 | 14400 | > th | dose independent | rect. | 9 | 3 |
| 3 | 19.74 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 4 | 19.80 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 5 | 19.82 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 12 | 23 |
| 7 | 19.91 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 12 | 23 |
| 8 | 19.95 | wind | 3 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 15 | 20.12 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 16 |
| 17 | 20.13 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 8 |
| 18 | 20.14 | temperature | 15 | 90 | > th | dose dependent | rect. | 22 | 14 |
| 20 | 20.15 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 23 | 20.15 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 12 | 21 |
| 29 | 20.18 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 4 |
| 34 | 20.20 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 4 |
| 36 | 20.20 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 8 |
| 37 | 20.20 | radiation | 1 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 47 | 20.22 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 49 | 20.23 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 59 | 20.24 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 1 | 23 |
| 60 | 20.24 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 23 | 23 |
| 61 | 20.24 | wind | 1 | 14400 | < th | dose dependent | rect. | 9 | 3 |
| 64 | 20.25 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 89 | 20.30 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 20 | 20 |
| 133 | 20.36 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 16 |
| 147 | 20.39 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 198 | 20.44 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 6 | 23 |
| 216 | 20.45 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 15 | 23 |
| 217 | 20.45 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 1 | 23 |
| 218 | 20.45 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 9 | 23 |
| 220 | 20.45 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 23 | 23 |
| 223 | 20.46 | atmosphere | 1000 | 10 | > th | dose independent | no | NA | NA |
| 225 | 20.46 | atmosphere | 1000 | 10 | < th | dose independent | no | NA | NA |
| 260 | 20.47 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 3 | 23 |
| 265 | 20.47 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 11 | 23 |
| 279 | 20.48 | atmosphere | 1000 | 30 | < th | dose independent | rect. | 13 | 23 |
| 280 | 20.48 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 15 | 23 |
| 346 | 20.52 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 9 | 23 |
| 375 | 20.54 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 5 | 16 |
| 392 | 20.55 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 7 | 23 |
| 401 | 20.56 | radiation | 40 | 10 | < th | dose dependent | sin | 1 | NA |
| 407 | 20.56 | radiation | 10 | 10 | > th | dose dependent | rect. | 15 | 21 |
| 421 | 20.57 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 21 | 23 |
| 444 | 20.59 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 451 | 20.59 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 17 | 23 |
| 488 | 20.61 | radiation | 1 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 502 | 20.62 | temperature | 20 | 90 | > th | dose dependent | sin | 7 | NA |
| 513 | 20.63 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 3 | 23 |
| 516 | 20.63 | humidity | 80 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 541 | 20.65 | radiation | 30 | 270 | < th | dose independent | rect. | 1 | 16 |
| 550 | 20.65 | radiation | 1 | 10 | > th | dose dependent | sin | 2 | NA |
| 553 | 20.65 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 21 | 19 |
| 558 | 20.66 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 2 | 16 |
| 562 | 20.66 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 3 |
| 571 | 20.67 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 590 | 20.67 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 21 | 18 |
| 602 | 20.68 | radiation | 10 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 643 | 20.70 | wind | 9 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 644 | 20.70 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 654 | 20.70 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 690 | 20.73 | atmosphere | 1000 | 10 | < th | dose independent | sin | 4 | NA |
| 699 | 20.73 | temperature | 20 | 90 | > th | dose independent | rect. | 21 | 15 |
| 715 | 20.73 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 733 | 20.74 | radiation | 20 | 90 | < th | dose independent | rect. | 12 | 23 |
| 745 | 20.75 | humidity | 90 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 778 | 20.76 | radiation | 30 | 270 | < th | dose independent | rect. | 10 | 22 |
| 783 | 20.76 | wind | 9 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 789 | 20.76 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 5 |
| 791 | 20.76 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 8 |
| 802 | 20.76 | radiation | 40 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 803 | 20.76 | radiation | 40 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 817 | 20.77 | radiation | 1 | 10 | > th | dose dependent | rect. | 6 | 12 |
| 841 | 20.78 | wind | 9 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 855 | 20.78 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 5 | 23 |
| 861 | 20.78 | radiation | 1 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 864 | 20.78 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 20 | 16 |
| 870 | 20.78 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 871 | 20.78 | radiation | 1 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 873 | 20.79 | wind | 9 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 874 | 20.79 | wind | 9 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 893 | 20.79 | radiation | 1 | 10 | > th | dose dependent | no | NA | NA |
| 894 | 20.79 | radiation | 1 | 270 | > th | dose dependent | rect. | 6 | 6 |
| 896 | 20.79 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 900 | 20.79 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 10 |
| 992 | 20.80 | temperature | 25 | 43200 | < th | dose independent | rect. | 20 | 1 |