Os02g0196000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc/iron permease family protein.
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Os02g0196000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc/iron permease family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.39 | 0.267 | 10.2 | -0.57 | 0.463 | -0.183 | -0.18 | -1.5 | -0.31 | 9.07 | 1.14 | 4370 | -- | -- |
| 34.02 | 0.274 | 10.2 | -0.248 | 0.556 | -0.169 | -0.253 | -- | -0.27 | 9.79 | 18.12 | 12314 | -- | -- |
| 32.46 | 0.265 | 10.2 | -0.568 | 0.463 | -0.183 | -- | -1.52 | -0.31 | 9.09 | 1.15 | 4402 | -- | -- |
| 33.94 | 0.271 | 10.1 | -0.285 | 0.444 | -0.231 | -- | -- | -0.233 | 9.15 | 31.71 | 3229 | -- | -- |
| 39.56 | 0.295 | 10.2 | -0.273 | -- | 0.253 | -- | -0.327 | -0.27 | -- | 1.15 | 4402 | -- | -- |
| 35.17 | 0.278 | 10.2 | -0.256 | 0.452 | -- | -0.286 | -- | -0.265 | 9.07 | -- | -- | -- | -- |
| 35.45 | 0.279 | 10.2 | -0.267 | 0.453 | -- | -- | -- | -0.265 | 9.04 | -- | -- | -- | -- |
| 40.25 | 0.297 | 10.2 | -0.27 | -- | 0.251 | -- | -- | -0.269 | -- | 1.15 | 4402 | -- | -- |
| 35.24 | 0.276 | 10.1 | -- | 0.46 | -0.225 | -- | -- | -0.204 | 8.99 | 40.04 | 2952 | -- | -- |
| 47.27 | 0.321 | 10.2 | -0.267 | -- | -- | -- | -- | -0.263 | -- | -- | -- | -- | -- |
| 37.32 | 0.286 | 10.1 | -- | 0.453 | -- | -- | -- | -0.236 | 9.09 | -- | -- | -- | -- |
| 39.15 | 0.291 | 10.2 | -- | -- | -0.518 | -- | -- | -0.168 | -- | 3.152 | 2474 | -- | -- |
| 49.16 | 0.327 | 10.2 | -- | -- | -- | -- | -- | -0.233 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.65 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 2 | 31.65 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 3 | 31.86 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 6 | 11 |
| 4 | 31.87 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 6 | 11 |
| 5 | 31.92 | temperature | 30.0 | 10 | > th | dose independent | rect. | 9 | 7 |
| 20 | 31.95 | temperature | 30.0 | 90 | > th | dose independent | rect. | 8 | 8 |
| 34 | 31.96 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 43 | 32.10 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 21 | 20 |
| 99 | 32.19 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 104 | 32.22 | wind | 9.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 105 | 32.22 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 108 | 32.22 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 112 | 32.22 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 122 | 32.22 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 123 | 32.22 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 143 | 32.22 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 24 | 23 |
| 153 | 32.26 | temperature | 25.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 154 | 32.28 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 155 | 32.28 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 5 | 12 |
| 157 | 32.29 | humidity | 90.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 160 | 32.29 | temperature | 15.0 | 30 | > th | dose independent | rect. | 23 | 23 |
| 161 | 32.29 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 165 | 32.30 | wind | 3.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 167 | 32.30 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 173 | 32.30 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 11 |
| 184 | 32.30 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 23 | 23 |
| 191 | 32.31 | humidity | 80.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 195 | 32.31 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 6 | 16 |
| 221 | 32.34 | radiation | 1.0 | 4320 | > th | dose independent | sin | 0 | NA |
| 222 | 32.34 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 22 | 1 |
| 225 | 32.34 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 227 | 32.34 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 229 | 32.35 | radiation | 1.0 | 4320 | < th | dose independent | sin | 1 | NA |
| 230 | 32.35 | wind | 1.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 243 | 32.35 | wind | 5.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 249 | 32.36 | temperature | 10.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 252 | 32.36 | temperature | 30.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 253 | 32.36 | humidity | 50.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 257 | 32.36 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 259 | 32.36 | radiation | 1.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 266 | 32.36 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 273 | 32.37 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 276 | 32.38 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 23 | 23 |
| 277 | 32.38 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 279 | 32.39 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 286 | 32.41 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 23 | 8 |
| 289 | 32.41 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 23 | 8 |
| 306 | 32.42 | wind | 1.0 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 316 | 32.43 | radiation | 1.0 | 4320 | < th | dose dependent | sin | 23 | NA |
| 319 | 32.43 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 14 | 5 |
| 322 | 32.44 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 12 | 20 |
| 326 | 32.44 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 328 | 32.44 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 2 | 5 |
| 341 | 32.45 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 13 | 21 |
| 345 | 32.45 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 352 | 32.46 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 13 | 19 |
| 369 | 32.47 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 377 | 32.47 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 12 |
| 398 | 32.47 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 9 | 23 |
| 436 | 32.48 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 9 | 23 |
| 443 | 32.49 | temperature | 30.0 | 90 | > th | dose independent | sin | 4 | NA |
| 445 | 32.49 | radiation | 1.0 | 4320 | > th | dose independent | no | NA | NA |
| 486 | 32.49 | wind | 9.0 | 30 | < th | dose independent | rect. | 23 | 23 |
| 502 | 32.49 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 24 | 9 |
| 508 | 32.50 | radiation | 1.0 | 4320 | < th | dose independent | no | NA | NA |
| 582 | 32.50 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 13 | 19 |
| 596 | 32.51 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 15 | 2 |
| 603 | 32.52 | temperature | 30.0 | 90 | < th | dose independent | sin | 4 | NA |
| 636 | 32.52 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 9 | 23 |
| 679 | 32.54 | temperature | 30.0 | 270 | < th | dose independent | sin | 7 | NA |
| 680 | 32.54 | radiation | 1.0 | 4320 | > th | dose independent | sin | 17 | NA |
| 764 | 32.55 | temperature | 30.0 | 270 | > th | dose independent | sin | 7 | NA |
| 766 | 32.55 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 804 | 32.55 | radiation | 1.0 | 4320 | < th | dose dependent | no | NA | NA |
| 805 | 32.55 | temperature | 30.0 | 30 | > th | dose dependent | rect. | 9 | 7 |
| 856 | 32.56 | wind | 9.0 | 720 | < th | dose independent | rect. | 19 | 16 |
| 875 | 32.58 | temperature | 30.0 | 30 | < th | dose independent | rect. | 23 | 23 |
| 903 | 32.59 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 904 | 32.59 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 935 | 32.61 | temperature | 30.0 | 10 | > th | dose independent | sin | 3 | NA |
| 938 | 32.61 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 987 | 32.62 | radiation | 1.0 | 4320 | < th | dose independent | sin | 15 | NA |