FiT-DB / Search/ Help/ Sample detail

Os02g0194700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12) (LOX2:Hv:3).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.6 (0.043) R2 : 0.749
β1 : -1.24 (0.213) R2dD : 0.0381 R2D : 0.0972
β2 : 2.54 (0.106) R2dC : 0.321 R2C : 0.325
β3 : 4 (0.183) R2dE : 0.363 R2E : 0.146
β4 : 2.59 (0.453) R2dD*C : 0.0181 R2D*C : 0.00706
β5 : 6.98 (0.673) R2dD*E : 0.138 R2D*E : 0.0363
γ1 : -0.0447 (0.0963) R2dN8 : 0.000187 R2N8 : -0.00987
σ : 0.783
deviance : 277.64
__
_____
C
peak time of C : 8
E
wheather : radiation
threshold : 1.14
memory length : 4326
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 12.1
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
277.64 0.783 13.6 -1.24 2.54 4 2.59 6.98 -0.0447 8 1.14 4326 12.1 --
336.07 0.854 13.6 -1.86 2.6 3.04 2.68 -- 0.0783 7.58 2.543 5835 13.4 --
297.27 0.803 13.6 -1.14 2.54 3.99 -- 7.01 -0.046 8.11 1.157 4324 12.1 --
352.04 0.874 13.6 -1.34 2.59 2.81 -- -- -0.0195 7.86 2.449 4364 11.8 --
649.18 1.19 13.7 -1.12 -- 4.08 -- 7.25 -0.0239 -- 1.14 4320 12.2 --
568.3 1.12 13.5 -2.24 2.57 -- 2.75 -- 0.404 8 -- -- -- --
590.64 1.14 13.5 -2.16 2.56 -- -- -- 0.403 8.08 -- -- -- --
687.41 1.22 13.8 -2.54 -- 3.11 -- -- -0.317 -- 2 4367 14.5 --
426.93 0.962 13.6 -- 2.58 3.26 -- -- -0.0679 8.15 2.59 4354 10.1 --
950.26 1.44 13.6 -2.13 -- -- -- -- 0.434 -- -- -- -- --
713.32 1.25 13.5 -- 2.55 -- -- -- 0.643 8.14 -- -- -- --
799.21 1.32 13.7 -- -- 3.13 -- -- 0.0751 -- 2.614 4335 10.2 --
1070.45 1.53 13.5 -- -- -- -- -- 0.671 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 262.21 humidity 80.0 43200 > th dose independent rect. 16 1
2 263.08 humidity 80.0 43200 > th dose independent rect. 14 4
3 264.14 humidity 80.0 43200 < th dose independent rect. 15 2
6 264.50 humidity 80.0 43200 < th dose independent rect. 14 4
10 265.69 humidity 80.0 43200 > th dose independent rect. 12 7
15 266.18 humidity 80.0 43200 > th dose dependent rect. 17 2
26 267.04 radiation 1.0 14400 < th dose dependent rect. 17 1
38 267.67 humidity 80.0 43200 > th dose dependent rect. 14 8
45 267.93 humidity 90.0 43200 > th dose dependent rect. 20 1
65 268.84 radiation 1.0 43200 < th dose independent rect. 16 2
80 269.25 humidity 90.0 43200 < th dose independent rect. 17 6
87 269.40 humidity 90.0 43200 < th dose independent rect. 20 2
106 270.09 radiation 1.0 43200 > th dose independent rect. 16 2
129 270.57 radiation 1.0 14400 < th dose independent rect. 8 10
134 270.73 radiation 1.0 43200 < th dose independent rect. 15 6
143 270.83 radiation 1.0 43200 < th dose independent rect. 15 12
160 271.11 radiation 1.0 14400 > th dose independent rect. 8 10
194 271.61 humidity 90.0 43200 > th dose independent rect. 17 5
205 271.85 humidity 80.0 43200 > th dose dependent sin 19 NA
210 271.93 humidity 90.0 43200 < th dose independent sin 18 NA
237 272.15 radiation 1.0 43200 < th dose independent sin 17 NA
242 272.26 radiation 1.0 4320 > th dose independent rect. 12 6
268 272.66 radiation 1.0 4320 > th dose independent rect. 14 4
294 272.91 precipitation 0.1 43200 > th dose independent rect. 13 8
319 273.16 precipitation 0.1 43200 < th dose independent rect. 13 8
323 273.16 precipitation 0.1 43200 < th dose dependent rect. 13 8
359 273.89 radiation 1.0 43200 > th dose independent sin 17 NA
360 273.89 radiation 1.0 43200 < th dose independent rect. 9 20
364 273.94 radiation 1.0 43200 < th dose independent rect. 9 12
374 274.02 radiation 1.0 43200 < th dose independent rect. 9 18
409 274.19 precipitation 0.1 43200 < th dose independent rect. 13 10
410 274.19 precipitation 0.1 43200 < th dose dependent rect. 13 10
467 274.80 radiation 1.0 43200 < th dose dependent rect. 15 6
480 274.89 precipitation 0.1 43200 > th dose independent rect. 16 5
488 275.03 precipitation 0.1 43200 < th dose independent rect. 16 5
489 275.03 precipitation 0.1 43200 < th dose dependent rect. 16 5
490 275.05 radiation 10.0 14400 < th dose dependent rect. 2 4
495 275.06 radiation 1.0 43200 < th dose dependent rect. 15 12
497 275.07 precipitation 0.1 43200 > th dose independent rect. 13 13
498 275.07 precipitation 0.1 43200 < th dose independent rect. 13 13
500 275.07 precipitation 0.1 43200 < th dose dependent rect. 13 13
501 275.10 radiation 10.0 14400 < th dose dependent rect. 4 2
508 275.16 radiation 40.0 14400 < th dose dependent rect. 2 4
551 275.31 radiation 40.0 14400 < th dose dependent rect. 4 2
595 275.52 radiation 10.0 14400 < th dose dependent rect. 18 12
603 275.60 radiation 10.0 14400 < th dose dependent rect. 23 7
616 275.65 radiation 1.0 43200 > th dose independent rect. 8 21
638 275.72 precipitation 0.1 43200 < th dose independent rect. 16 10
640 275.72 precipitation 0.1 43200 < th dose dependent rect. 16 10
657 275.75 precipitation 0.1 43200 > th dose independent rect. 16 10
795 276.39 precipitation 0.1 43200 < th dose independent rect. 15 8
797 276.39 precipitation 0.1 43200 < th dose dependent rect. 15 8
923 276.84 radiation 1.0 14400 < th dose dependent rect. 8 10
941 276.90 humidity 90.0 43200 > th dose independent rect. 11 15
942 276.90 radiation 1.0 43200 < th dose dependent sin 16 NA
998 277.06 radiation 1.0 43200 < th dose independent rect. 15 19