Os02g0194600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os02g0194600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 146.68 | 0.569 | 3.04 | -0.0925 | 0.196 | 5.28 | -0.3 | 8.96 | 0.198 | 3.44 | 9.618 | 188 | -- | -- |
| 148.89 | 0.568 | 3.01 | -0.161 | 0.19 | 3.07 | -0.367 | -- | 0.199 | 2.72 | 9.9 | 193 | -- | -- |
| 146.94 | 0.565 | 3.04 | -0.0893 | 0.196 | 5.28 | -- | 9.17 | 0.2 | 3.41 | 9.6 | 187 | -- | -- |
| 149.32 | 0.569 | 3.01 | -0.157 | 0.194 | 2.97 | -- | -- | 0.203 | 3.24 | 9.9 | 193 | -- | -- |
| 148.98 | 0.568 | 3.04 | -0.0856 | -- | 5.25 | -- | 9.56 | 0.201 | -- | 9.6 | 187 | -- | -- |
| 167.98 | 0.608 | 3.02 | -0.321 | 0.117 | -- | -0.0333 | -- | 0.147 | 2.36 | -- | -- | -- | -- |
| 167.98 | 0.607 | 3.02 | -0.321 | 0.117 | -- | -- | -- | 0.147 | 2.45 | -- | -- | -- | -- |
| 151.36 | 0.573 | 3.01 | -0.18 | -- | 3.03 | -- | -- | 0.197 | -- | 10.2 | 222 | -- | -- |
| 149.94 | 0.57 | 3 | -- | 0.194 | 3.06 | -- | -- | 0.222 | 3.25 | 9.883 | 191 | -- | -- |
| 168.79 | 0.607 | 3.02 | -0.316 | -- | -- | -- | -- | 0.15 | -- | -- | -- | -- | -- |
| 170.69 | 0.611 | 3.01 | -- | 0.111 | -- | -- | -- | 0.183 | 2.41 | -- | -- | -- | -- |
| 152.03 | 0.574 | 3 | -- | -- | 2.94 | -- | -- | 0.224 | -- | 9.9 | 189 | -- | -- |
| 171.42 | 0.611 | 3.01 | -- | -- | -- | -- | -- | 0.185 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 147.81 | wind | 7 | 30 | < th | dose independent | rect. | 21 | 23 |
| 2 | 147.83 | wind | 9 | 270 | > th | dose dependent | rect. | 14 | 22 |
| 10 | 149.03 | wind | 9 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 15 | 149.16 | wind | 9 | 270 | > th | dose dependent | no | NA | NA |
| 16 | 149.16 | wind | 9 | 270 | > th | dose dependent | rect. | 9 | 17 |
| 31 | 149.16 | wind | 9 | 270 | > th | dose dependent | rect. | 1 | 22 |
| 48 | 149.19 | wind | 9 | 270 | > th | dose dependent | rect. | 9 | 14 |
| 73 | 149.24 | wind | 9 | 720 | > th | dose dependent | rect. | 11 | 1 |
| 78 | 149.33 | wind | 9 | 270 | > th | dose independent | rect. | 13 | 23 |
| 79 | 149.33 | wind | 9 | 720 | > th | dose dependent | rect. | 22 | 14 |
| 89 | 149.44 | wind | 9 | 30 | > th | dose dependent | rect. | 17 | 21 |
| 95 | 149.56 | wind | 9 | 720 | > th | dose independent | rect. | 11 | 1 |
| 96 | 149.59 | wind | 9 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 102 | 149.68 | wind | 9 | 270 | < th | dose independent | no | NA | NA |
| 122 | 149.74 | wind | 9 | 270 | > th | dose dependent | rect. | 1 | 17 |
| 126 | 149.79 | wind | 9 | 270 | > th | dose dependent | rect. | 9 | 9 |
| 137 | 149.82 | wind | 9 | 720 | > th | dose independent | rect. | 22 | 14 |
| 161 | 149.98 | wind | 9 | 270 | > th | dose dependent | sin | 21 | NA |
| 164 | 150.06 | wind | 9 | 270 | > th | dose independent | rect. | 16 | 23 |
| 175 | 150.14 | wind | 9 | 720 | > th | dose dependent | rect. | 1 | 11 |
| 181 | 150.15 | wind | 9 | 30 | > th | dose dependent | rect. | 11 | 15 |
| 197 | 150.21 | wind | 9 | 270 | > th | dose independent | rect. | 19 | 23 |
| 198 | 150.22 | wind | 9 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 202 | 150.27 | wind | 9 | 30 | > th | dose dependent | no | NA | NA |
| 218 | 150.27 | wind | 9 | 30 | > th | dose dependent | rect. | 1 | 21 |
| 243 | 150.27 | wind | 9 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 246 | 150.27 | wind | 9 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 254 | 150.34 | wind | 9 | 270 | > th | dose independent | no | NA | NA |
| 255 | 150.34 | wind | 9 | 270 | > th | dose independent | rect. | 9 | 17 |
| 270 | 150.34 | wind | 9 | 270 | > th | dose independent | rect. | 1 | 22 |
| 290 | 150.39 | wind | 9 | 270 | > th | dose independent | rect. | 9 | 14 |
| 318 | 150.43 | wind | 9 | 270 | > th | dose independent | rect. | 11 | 23 |
| 320 | 150.43 | wind | 9 | 30 | > th | dose dependent | rect. | 11 | 11 |
| 327 | 150.45 | wind | 9 | 720 | > th | dose dependent | rect. | 9 | 3 |
| 345 | 150.55 | wind | 9 | 720 | > th | dose independent | rect. | 1 | 12 |
| 384 | 150.56 | wind | 9 | 720 | > th | dose dependent | sin | 6 | NA |
| 387 | 150.56 | wind | 9 | 30 | > th | dose dependent | rect. | 21 | 21 |
| 389 | 150.57 | wind | 9 | 270 | > th | dose independent | sin | 16 | NA |
| 403 | 150.60 | wind | 9 | 270 | < th | dose independent | sin | 21 | NA |
| 445 | 150.68 | wind | 9 | 720 | < th | dose independent | sin | 5 | NA |
| 474 | 150.73 | wind | 9 | 720 | > th | dose independent | sin | 6 | NA |
| 491 | 150.76 | wind | 9 | 30 | > th | dose dependent | rect. | 11 | 9 |
| 509 | 150.77 | wind | 9 | 720 | > th | dose dependent | rect. | 18 | 18 |
| 554 | 150.84 | wind | 9 | 720 | > th | dose independent | rect. | 10 | 3 |
| 611 | 150.89 | wind | 9 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 647 | 150.95 | wind | 9 | 720 | > th | dose independent | rect. | 18 | 19 |
| 652 | 150.97 | wind | 9 | 30 | > th | dose dependent | sin | 19 | NA |
| 686 | 151.04 | wind | 9 | 30 | > th | dose dependent | rect. | 11 | 7 |
| 724 | 151.13 | wind | 9 | 270 | > th | dose independent | rect. | 1 | 17 |
| 757 | 151.19 | wind | 9 | 270 | > th | dose independent | rect. | 9 | 9 |
| 762 | 151.19 | wind | 9 | 270 | > th | dose independent | rect. | 13 | 13 |
| 795 | 151.24 | wind | 9 | 270 | > th | dose independent | rect. | 13 | 10 |
| 870 | 151.30 | wind | 9 | 270 | > th | dose dependent | rect. | 13 | 13 |
| 907 | 151.34 | wind | 9 | 270 | > th | dose dependent | rect. | 13 | 10 |
| 994 | 151.46 | wind | 9 | 30 | > th | dose dependent | rect. | 17 | 19 |