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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0194400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.5 (0.0309) R2 : 0.37
β1 : 1.61 (0.113) R2dD : 0.292 R2D : 0.233
β2 : 0.551 (0.0768) R2dC : 0.0715 R2C : 0.0541
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.413 (0.0659) R2dN8 : 0.0725 R2N8 : 0.00588
σ : 0.581
deviance : 153.84
__
_____
C
peak time of C : 20.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
135.9 0.548 3.45 1.4 0.558 0.372 0.903 2.34 0.464 20.7 -5.788e-06 5459 -- --
139.24 0.55 3.48 1.46 0.565 0.707 1.12 -- 0.5 20.9 0.2865 6773 -- --
135.54 0.542 3.46 1.37 0.559 0.391 -- 2.3 0.455 21 -0.07452 13693 -- --
138.46 0.548 3.46 1.49 0.542 0.851 -- -- 0.525 21 0.4419 16761 -- --
152.66 0.575 3.45 1.42 -- 0.346 -- 2.37 0.474 -- 0.311 13574 -- --
151.26 0.577 3.5 1.64 0.554 -- 0.871 -- 0.413 20.9 -- -- -- --
153.84 0.581 3.5 1.61 0.551 -- -- -- 0.413 20.9 -- -- -- --
154.89 0.58 3.46 1.32 -- 0.847 -- -- 0.503 -- 0.4863 16313 -- --
158.58 0.587 3.49 -- 0.561 1.46 -- -- 0.466 21.3 0.6156 27684 -- --
171.18 0.611 3.48 1.61 -- -- -- -- 0.409 -- -- -- -- --
222.57 0.698 3.54 -- 0.549 -- -- -- 0.233 21.1 -- -- -- --
176.07 0.618 3.47 -- -- 1.5 -- -- 0.492 -- 0.5783 27750 -- --
239.97 0.723 3.52 -- -- -- -- -- 0.23 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 126.88 humidity 80.0 1440 < th dose independent rect. 11 1
2 127.11 humidity 80.0 1440 > th dose independent rect. 11 1
3 127.37 precipitation 0.1 14400 > th dose dependent rect. 13 4
6 128.21 precipitation 0.1 14400 > th dose independent rect. 13 4
7 128.26 precipitation 0.1 14400 < th dose independent rect. 13 4
8 128.26 precipitation 0.1 14400 < th dose dependent rect. 13 4
10 128.35 precipitation 0.1 14400 > th dose dependent rect. 16 1
14 128.59 precipitation 0.1 14400 > th dose independent rect. 13 7
15 128.65 precipitation 0.1 14400 < th dose independent rect. 13 7
16 128.65 precipitation 0.1 14400 < th dose dependent rect. 13 7
17 128.66 precipitation 0.1 14400 > th dose independent rect. 16 1
19 128.73 precipitation 0.1 14400 < th dose independent rect. 16 1
21 128.73 precipitation 0.1 14400 < th dose dependent rect. 16 1
32 129.05 precipitation 0.1 14400 > th dose independent rect. 16 4
33 129.09 precipitation 0.1 4320 > th dose dependent rect. 1 16
34 129.10 precipitation 0.1 14400 < th dose independent rect. 16 4
35 129.10 precipitation 0.1 14400 < th dose dependent rect. 16 4
41 129.16 precipitation 0.1 14400 > th dose dependent rect. 18 2
58 129.47 precipitation 0.1 14400 > th dose dependent rect. 13 7
66 129.64 precipitation 0.1 14400 > th dose independent rect. 18 2
79 129.92 humidity 70.0 1440 > th dose dependent rect. 11 1
81 129.92 precipitation 0.1 14400 > th dose dependent rect. 3 17
84 129.95 precipitation 0.1 14400 > th dose dependent rect. 13 1
89 130.02 precipitation 0.1 14400 > th dose dependent rect. 16 4
97 130.17 precipitation 0.1 4320 < th dose independent rect. 1 16
98 130.17 precipitation 0.1 4320 < th dose dependent rect. 1 16
101 130.20 precipitation 0.1 4320 > th dose independent rect. 1 16
110 130.30 precipitation 0.1 14400 > th dose independent rect. 4 16
114 130.34 precipitation 0.1 14400 < th dose independent rect. 4 16
116 130.34 precipitation 0.1 14400 < th dose dependent rect. 4 16
123 130.38 precipitation 0.1 4320 > th dose dependent rect. 2 12
131 130.48 wind 3.0 14400 < th dose dependent rect. 23 5
157 130.83 wind 3.0 14400 < th dose dependent rect. 21 8
171 130.98 precipitation 0.1 4320 > th dose dependent sin 4 NA
172 130.99 precipitation 0.1 1440 > th dose dependent rect. 5 4
178 131.05 humidity 80.0 43200 > th dose independent rect. 6 1
207 131.22 humidity 80.0 14400 > th dose independent rect. 13 1
237 131.52 precipitation 0.1 1440 > th dose independent rect. 5 4
239 131.52 precipitation 0.1 14400 > th dose dependent sin 1 NA
265 131.70 wind 1.0 14400 > th dose dependent rect. 24 1
271 131.73 precipitation 0.1 14400 > th dose independent sin 23 NA
272 131.74 precipitation 0.1 14400 < th dose independent sin 23 NA
274 131.74 precipitation 0.1 4320 < th dose independent rect. 2 12
275 131.74 precipitation 0.1 14400 < th dose dependent sin 23 NA
277 131.74 precipitation 0.1 4320 < th dose dependent rect. 2 12
289 131.84 precipitation 0.1 4320 > th dose independent sin 3 NA
290 131.84 precipitation 0.1 4320 < th dose independent sin 3 NA
291 131.84 precipitation 0.1 4320 > th dose independent rect. 2 12
293 131.84 precipitation 0.1 4320 < th dose dependent sin 3 NA
306 131.93 precipitation 0.1 4320 < th dose independent rect. 3 3
311 131.93 precipitation 0.1 4320 < th dose dependent rect. 3 3
336 132.05 humidity 80.0 14400 > th dose dependent rect. 13 1
338 132.07 precipitation 0.1 4320 > th dose independent rect. 3 3
374 132.19 precipitation 0.1 4320 > th dose dependent rect. 3 3
391 132.28 precipitation 0.1 4320 > th dose dependent rect. 3 6
402 132.32 wind 3.0 14400 < th dose independent rect. 24 1
420 132.38 humidity 80.0 43200 < th dose independent rect. 6 1
462 132.58 precipitation 0.1 14400 < th dose independent rect. 13 1
463 132.58 precipitation 0.1 14400 < th dose dependent rect. 13 1
489 132.68 precipitation 0.1 14400 > th dose independent rect. 13 1
491 132.70 precipitation 0.1 4320 > th dose dependent rect. 3 1
492 132.71 precipitation 0.1 1440 < th dose independent rect. 5 8
493 132.71 precipitation 0.1 1440 < th dose dependent rect. 5 8
530 132.83 humidity 90.0 1440 < th dose dependent rect. 10 2
587 133.02 wind 3.0 14400 > th dose independent rect. 24 1
599 133.07 precipitation 0.1 1440 < th dose independent rect. 5 3
600 133.07 precipitation 0.1 1440 < th dose dependent rect. 5 3
613 133.10 precipitation 0.1 4320 < th dose independent rect. 1 7
617 133.10 precipitation 0.1 4320 < th dose dependent rect. 1 7
626 133.12 precipitation 0.1 14400 > th dose dependent rect. 13 17
630 133.13 precipitation 0.1 14400 > th dose dependent rect. 3 21
637 133.15 wind 1.0 14400 > th dose independent rect. 21 8
687 133.28 precipitation 0.1 1440 < th dose independent rect. 5 6
688 133.28 wind 1.0 14400 > th dose independent rect. 19 12
690 133.28 precipitation 0.1 1440 < th dose dependent rect. 5 6
703 133.30 precipitation 0.1 4320 > th dose dependent rect. 18 23
718 133.34 humidity 80.0 14400 < th dose independent rect. 13 1
734 133.37 humidity 80.0 14400 > th dose independent rect. 10 1
853 133.63 precipitation 0.1 14400 > th dose dependent rect. 7 23
882 133.68 wind 1.0 14400 > th dose dependent rect. 22 6
928 133.74 precipitation 0.1 14400 > th dose dependent no NA NA
933 133.74 precipitation 0.1 14400 > th dose dependent rect. 15 23
948 133.78 wind 1.0 4320 > th dose independent rect. 18 1
994 133.90 precipitation 0.1 14400 > th dose dependent rect. 13 13