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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0192300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, FYVE/PHD-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.19 (0.018) R2 : 0.000154
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.01 (0.0379) R2dN8 : 0.000198 R2N8 : 0.000154
σ : 0.339
deviance : 52.74
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
48.02 0.326 3.21 0.164 0.187 -0.228 -0.293 -1.11 -0.0388 6.75 44.94 5939 -- --
49.82 0.329 3.2 0.0712 0.172 -0.219 -0.342 -- -0.051 6.48 43.02 5864 -- --
48.22 0.323 3.21 0.148 0.182 -0.229 -- -1.09 -0.0416 7.15 43.01 5973 -- --
49.82 0.329 3.21 0.0825 0.224 -0.288 -- -- -0.121 7.07 69.59 4847 -- --
50.03 0.329 3.21 0.162 -- -0.223 -- -1.12 -0.0345 -- 41.33 5885 -- --
50.66 0.334 3.19 0.0565 0.183 -- -0.329 -- -0.00847 6.64 -- -- -- --
50.89 0.334 3.19 0.0523 0.183 -- -- -- -0.00705 7.17 -- -- -- --
51.69 0.335 3.21 0.0842 -- -0.247 -- -- -0.0995 -- 68.54 5699 -- --
49.98 0.329 3.21 -- 0.222 -0.268 -- -- -0.119 7 68 4826 -- --
52.66 0.339 3.19 0.0557 -- -- -- -- -0.00385 -- -- -- -- --
50.96 0.334 3.19 -- 0.183 -- -- -- -0.0129 7.15 -- -- -- --
51.87 0.335 3.21 -- -- -0.232 -- -- -0.102 -- 68 5699 -- --
52.74 0.339 3.19 -- -- -- -- -- -0.01 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 44.71 atmosphere 1000.0 30 > th dose independent rect. 3 23
2 44.84 atmosphere 1005.0 90 > th dose dependent rect. 2 1
4 45.29 atmosphere 1005.0 10 > th dose dependent rect. 2 2
6 45.43 temperature 25.0 90 > th dose dependent rect. 1 3
7 45.44 radiation 1.0 43200 < th dose dependent rect. 3 1
9 45.49 radiation 1.0 4320 < th dose dependent rect. 3 1
13 45.51 wind 9.0 1440 < th dose independent rect. 3 1
14 45.51 temperature 10.0 1440 > th dose independent rect. 3 1
17 45.51 temperature 30.0 1440 < th dose independent rect. 3 1
21 45.51 humidity 50.0 1440 > th dose independent rect. 3 1
30 45.51 atmosphere 995.0 1440 > th dose independent rect. 3 1
31 45.51 radiation 1.0 1440 < th dose independent rect. 3 1
51 45.51 temperature 10.0 1440 > th dose independent rect. 4 23
69 45.56 temperature 25.0 90 > th dose independent rect. 1 1
70 45.56 temperature 20.0 30 > th dose dependent rect. 2 1
77 45.60 atmosphere 1005.0 30 > th dose independent rect. 2 1
81 45.62 wind 3.0 30 < th dose independent rect. 2 1
86 45.63 wind 3.0 30 < th dose dependent rect. 2 1
90 45.64 humidity 90.0 30 > th dose independent rect. 2 1
92 45.65 temperature 10.0 30 > th dose independent rect. 2 1
94 45.65 temperature 30.0 30 < th dose independent rect. 2 1
95 45.65 humidity 50.0 30 > th dose independent rect. 2 1
100 45.65 atmosphere 1010.0 30 < th dose independent rect. 2 1
102 45.65 radiation 1.0 30 < th dose independent rect. 2 1
107 45.65 precipitation 0.1 30 < th dose independent rect. 2 1
108 45.65 temperature 10.0 30 > th dose independent rect. 3 23
109 45.65 humidity 50.0 30 > th dose dependent rect. 2 1
113 45.65 radiation 1.0 30 < th dose dependent rect. 2 1
118 45.65 precipitation 0.1 30 < th dose dependent rect. 2 1
121 45.72 atmosphere 1015.0 30 < th dose dependent rect. 2 1
122 45.74 wind 1.0 30 > th dose independent rect. 2 1
128 45.77 temperature 30.0 30 < th dose dependent rect. 2 1
131 45.83 precipitation 0.1 30 < th dose independent rect. 3 23
132 45.83 precipitation 0.1 30 < th dose dependent rect. 3 23
192 46.38 atmosphere 995.0 720 > th dose independent rect. 23 16
197 46.53 wind 9.0 30 < th dose independent rect. 3 23
208 46.78 humidity 50.0 30 > th dose independent rect. 3 23
218 47.04 humidity 90.0 90 < th dose independent rect. 2 1
247 47.24 humidity 80.0 10 < th dose independent rect. 7 1
257 47.34 radiation 10.0 30 > th dose independent rect. 7 1
260 47.40 precipitation 0.1 720 < th dose independent rect. 15 8
261 47.40 precipitation 0.1 720 < th dose dependent rect. 15 8
264 47.46 humidity 80.0 10 < th dose independent rect. 23 9
265 47.47 humidity 80.0 10 < th dose independent rect. 1 7
269 47.49 temperature 10.0 720 > th dose independent rect. 15 8
270 47.49 temperature 10.0 720 > th dose independent rect. 23 16
271 47.49 humidity 80.0 14400 < th dose dependent rect. 4 5
276 47.57 temperature 10.0 720 > th dose independent rect. 3 8
277 47.57 atmosphere 995.0 720 > th dose independent rect. 3 8
278 47.57 temperature 10.0 720 > th dose independent rect. 11 16
281 47.57 humidity 80.0 14400 < th dose dependent rect. 7 2
287 47.62 humidity 50.0 720 > th dose independent rect. 3 8
288 47.63 humidity 90.0 90 < th dose independent rect. 2 3
294 47.68 humidity 70.0 14400 > th dose independent rect. 8 1
295 47.68 humidity 70.0 14400 < th dose independent rect. 7 3
312 47.73 wind 9.0 720 < th dose independent rect. 3 8
314 47.74 humidity 70.0 14400 > th dose independent rect. 7 3
315 47.74 humidity 80.0 14400 < th dose dependent rect. 24 10
339 47.79 precipitation 0.1 720 < th dose independent rect. 11 16
341 47.79 precipitation 0.1 720 < th dose dependent rect. 11 16
369 47.87 wind 1.0 14400 < th dose dependent rect. 4 3
382 47.89 humidity 60.0 14400 < th dose independent rect. 11 1
397 47.95 humidity 50.0 30 > th dose dependent rect. 3 23
401 47.98 wind 1.0 14400 < th dose independent rect. 4 3
407 47.98 radiation 10.0 30 < th dose independent rect. 3 23
410 47.99 atmosphere 995.0 720 > th dose independent rect. 3 23
411 47.99 wind 1.0 14400 < th dose dependent rect. 6 1
415 48.02 wind 1.0 14400 > th dose independent rect. 4 3
416 48.02 atmosphere 995.0 720 > th dose independent rect. 7 8
417 48.02 radiation 10.0 10 > th dose independent rect. 16 16
432 48.05 atmosphere 1000.0 10 > th dose independent rect. 14 12
433 48.05 temperature 30.0 30 < th dose independent rect. 3 23
439 48.07 wind 1.0 14400 > th dose independent rect. 1 2
467 48.11 wind 1.0 14400 < th dose dependent rect. 2 5
470 48.12 humidity 60.0 14400 > th dose independent rect. 10 2
471 48.12 humidity 50.0 14400 > th dose dependent rect. 8 1
485 48.14 wind 1.0 14400 < th dose dependent rect. 2 1
506 48.17 atmosphere 1015.0 30 < th dose independent rect. 3 23
507 48.17 humidity 60.0 4320 > th dose dependent rect. 16 1
517 48.19 humidity 60.0 14400 < th dose dependent rect. 12 1
521 48.20 humidity 50.0 4320 > th dose dependent rect. 11 4
524 48.20 humidity 70.0 30 > th dose dependent rect. 3 23
528 48.22 humidity 90.0 4320 < th dose dependent rect. 14 1
537 48.24 wind 9.0 720 < th dose independent rect. 15 8
540 48.24 humidity 60.0 4320 > th dose dependent rect. 11 2
551 48.25 humidity 70.0 4320 > th dose dependent rect. 4 11
553 48.25 humidity 60.0 4320 > th dose dependent rect. 3 14
556 48.26 humidity 80.0 14400 < th dose dependent sin 7 NA
558 48.26 humidity 90.0 4320 < th dose dependent rect. 11 4
572 48.27 radiation 40.0 30 < th dose independent rect. 3 23
574 48.27 humidity 70.0 14400 < th dose dependent rect. 10 1
583 48.27 radiation 10.0 30 < th dose dependent rect. 3 23
641 48.30 humidity 80.0 4320 > th dose independent rect. 7 11
642 48.30 humidity 80.0 4320 < th dose independent rect. 7 11
663 48.30 humidity 70.0 4320 > th dose dependent rect. 7 11
674 48.31 humidity 80.0 4320 > th dose independent rect. 5 9
676 48.31 humidity 80.0 4320 < th dose independent rect. 5 10
683 48.31 humidity 50.0 4320 > th dose dependent rect. 14 1
686 48.31 humidity 60.0 14400 < th dose dependent rect. 12 4
701 48.32 humidity 80.0 4320 < th dose independent rect. 7 8
729 48.33 humidity 60.0 14400 < th dose independent sin 8 NA
730 48.33 humidity 70.0 4320 > th dose independent rect. 16 1
731 48.33 wind 1.0 14400 < th dose independent rect. 1 2
772 48.34 radiation 40.0 720 < th dose independent rect. 15 8
776 48.34 atmosphere 1000.0 10 > th dose independent rect. 16 10
811 48.35 humidity 70.0 4320 > th dose independent rect. 10 8
815 48.35 humidity 70.0 4320 > th dose dependent sin 2 NA
884 48.37 wind 3.0 30 < th dose dependent rect. 2 6
898 48.38 humidity 50.0 14400 > th dose independent rect. 15 1
900 48.38 humidity 70.0 4320 < th dose independent rect. 16 1