Os02g0191600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Eukaryotic transcription factor, DNA-binding domain containing protein.
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Os02g0191600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Eukaryotic transcription factor, DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 162 | 0.598 | 9.4 | 0.024 | 2.17 | -1.41 | 1.14 | 1.6 | -0.879 | 8.7 | 21.7 | 2590 | -- | -- |
| 166.98 | 0.602 | 9.47 | -0.335 | 2.24 | -1.53 | 1.09 | -- | -1.01 | 8.65 | 21.5 | 2737 | -- | -- |
| 166.22 | 0.6 | 9.4 | 0.0378 | 2.17 | -1.41 | -- | 1.52 | -0.892 | 8.76 | 21.63 | 2593 | -- | -- |
| 170.23 | 0.608 | 9.46 | -0.344 | 2.2 | -1.57 | -- | -- | -0.982 | 8.79 | 21.5 | 2760 | -- | -- |
| 393.25 | 0.924 | 9.41 | 0.31 | -- | -1.52 | -- | 1.85 | -0.778 | -- | 22.4 | 833 | -- | -- |
| 233.05 | 0.716 | 9.57 | -1.19 | 2.22 | -- | 1 | -- | -1.48 | 8.87 | -- | -- | -- | -- |
| 236.39 | 0.72 | 9.57 | -1.15 | 2.21 | -- | -- | -- | -1.47 | 8.94 | -- | -- | -- | -- |
| 387.51 | 0.917 | 9.51 | -0.528 | -- | -1.76 | -- | -- | -0.914 | -- | 21.82 | 796 | -- | -- |
| 172.3 | 0.611 | 9.45 | -- | 2.23 | -1.74 | -- | -- | -0.928 | 8.81 | 21.4 | 2927 | -- | -- |
| 516.36 | 1.06 | 9.63 | -1.15 | -- | -- | -- | -- | -1.46 | -- | -- | -- | -- | -- |
| 271.35 | 0.771 | 9.54 | -- | 2.21 | -- | -- | -- | -1.35 | 8.98 | -- | -- | -- | -- |
| 394.3 | 0.925 | 9.49 | -- | -- | -1.84 | -- | -- | -0.844 | -- | 21.84 | 809 | -- | -- |
| 551.43 | 1.1 | 9.6 | -- | -- | -- | -- | -- | -1.33 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 160.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 2 | 160.34 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 35 | 161.28 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 68 | 162.00 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 70 | 162.01 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 79 | 162.16 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 103 | 162.40 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 243 | 163.41 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 440 | 164.75 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 447 | 164.83 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 534 | 165.48 | temperature | 30 | 720 | < th | dose dependent | sin | 3 | NA |
| 682 | 166.63 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 719 | 166.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 733 | 166.88 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 772 | 167.09 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 847 | 167.46 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 865 | 167.53 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |