Os02g0190700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0190700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 612.65 | 1.16 | 4.53 | -2.08 | 4.04 | -2.39 | -1.33 | -1.26 | -1.03 | 15.2 | 71.93 | 11 | 14.6 | -- |
| 616.4 | 1.16 | 4.54 | -2.12 | 4.03 | -2.4 | -1.65 | -- | -1.04 | 15.2 | 72 | 11 | 14.7 | -- |
| 617.12 | 1.16 | 4.53 | -2.07 | 4.02 | -2.33 | -- | -1.87 | -1.03 | 15.1 | 71.98 | 11 | 15 | -- |
| 626.39 | 1.17 | 4.55 | -2.17 | 4.04 | -2.36 | -- | -- | -1.05 | 15.2 | 71.97 | 11 | 14.6 | -- |
| 930.58 | 1.43 | 4.51 | -1.97 | -- | -2.66 | -- | 1.21 | -0.942 | -- | 79.32 | 134 | 3.38 | -- |
| 802.72 | 1.33 | 4.52 | -1.92 | 3.45 | -- | -1.53 | -- | -1 | 14.7 | -- | -- | -- | -- |
| 810.94 | 1.33 | 4.53 | -1.96 | 3.44 | -- | -- | -- | -1.01 | 14.7 | -- | -- | -- | -- |
| 786.99 | 1.31 | 4.48 | -1.76 | -- | -3.32 | -- | -- | -0.85 | -- | 63 | 3 | 3.25 | -- |
| 749.45 | 1.28 | 4.49 | -- | 4.03 | -2.19 | -- | -- | -0.811 | 15.1 | 71.74 | 11 | 14.8 | -- |
| 1501.26 | 1.81 | 4.54 | -2.11 | -- | -- | -- | -- | -1.1 | -- | -- | -- | -- | -- |
| 912.15 | 1.41 | 4.48 | -- | 3.48 | -- | -- | -- | -0.796 | 14.7 | -- | -- | -- | -- |
| 882.77 | 1.38 | 4.46 | -- | -- | -3.39 | -- | -- | -0.742 | -- | 63.52 | 3 | 3.24 | -- |
| 1618.29 | 1.88 | 4.49 | -- | -- | -- | -- | -- | -0.868 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 616.00 | humidity | 70 | 10 | > th | dose independent | rect. | 7 | 15 |
| 2 | 623.09 | humidity | 50 | 10 | > th | dose dependent | rect. | 7 | 15 |
| 10 | 632.95 | radiation | 10 | 90 | < th | dose dependent | sin | 21 | NA |
| 11 | 633.27 | humidity | 80 | 10 | < th | dose dependent | rect. | 11 | 8 |
| 13 | 634.18 | humidity | 80 | 10 | < th | dose dependent | rect. | 11 | 14 |
| 14 | 634.26 | humidity | 80 | 10 | < th | dose dependent | sin | 20 | NA |
| 17 | 634.44 | humidity | 80 | 10 | < th | dose dependent | rect. | 11 | 21 |
| 19 | 634.49 | humidity | 70 | 10 | > th | dose independent | sin | 20 | NA |
| 56 | 638.69 | humidity | 50 | 10 | > th | dose dependent | sin | 21 | NA |
| 59 | 639.26 | humidity | 80 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 63 | 639.48 | humidity | 50 | 270 | > th | dose independent | rect. | 4 | 15 |
| 72 | 640.22 | humidity | 70 | 10 | < th | dose independent | rect. | 11 | 8 |
| 76 | 640.59 | humidity | 60 | 90 | > th | dose independent | rect. | 16 | 19 |
| 120 | 643.47 | humidity | 60 | 270 | > th | dose independent | rect. | 3 | 17 |
| 142 | 644.43 | humidity | 70 | 10 | > th | dose independent | rect. | 16 | 20 |
| 145 | 644.70 | humidity | 50 | 270 | > th | dose dependent | rect. | 4 | 15 |
| 150 | 645.31 | humidity | 50 | 270 | > th | dose dependent | rect. | 3 | 17 |
| 188 | 648.38 | radiation | 10 | 10 | < th | dose dependent | sin | 19 | NA |
| 206 | 649.12 | humidity | 60 | 270 | > th | dose independent | rect. | 14 | 6 |
| 218 | 649.38 | humidity | 70 | 10 | > th | dose independent | rect. | 3 | 19 |
| 220 | 649.41 | radiation | 1 | 30 | < th | dose independent | sin | 21 | NA |
| 221 | 649.48 | humidity | 80 | 10 | < th | dose dependent | rect. | 23 | 20 |
| 234 | 649.83 | radiation | 1 | 30 | > th | dose independent | sin | 21 | NA |
| 250 | 650.15 | humidity | 80 | 10 | < th | dose dependent | rect. | 7 | 12 |
| 271 | 650.66 | temperature | 30 | 270 | < th | dose independent | rect. | 14 | 6 |
| 278 | 650.91 | humidity | 50 | 90 | > th | dose dependent | rect. | 16 | 19 |
| 316 | 652.26 | humidity | 80 | 10 | < th | dose dependent | rect. | 7 | 18 |
| 364 | 652.82 | humidity | 70 | 10 | > th | dose independent | rect. | 14 | 22 |
| 368 | 652.87 | humidity | 80 | 10 | < th | dose dependent | no | NA | NA |
| 407 | 653.29 | humidity | 70 | 10 | < th | dose independent | sin | 20 | NA |
| 441 | 653.73 | humidity | 70 | 10 | > th | dose independent | rect. | 3 | 23 |
| 467 | 653.95 | radiation | 10 | 90 | < th | dose dependent | rect. | 7 | 15 |
| 513 | 654.58 | radiation | 10 | 270 | < th | dose dependent | rect. | 5 | 14 |
| 559 | 656.12 | radiation | 10 | 270 | < th | dose dependent | rect. | 11 | 8 |
| 576 | 656.68 | radiation | 10 | 10 | < th | dose dependent | rect. | 7 | 15 |
| 582 | 656.91 | humidity | 70 | 10 | > th | dose independent | rect. | 1 | 23 |
| 589 | 657.22 | humidity | 70 | 10 | > th | dose independent | no | NA | NA |
| 598 | 657.47 | radiation | 1 | 270 | < th | dose independent | rect. | 11 | 8 |
| 629 | 658.44 | radiation | 10 | 270 | < th | dose dependent | rect. | 13 | 6 |
| 634 | 658.68 | humidity | 50 | 270 | > th | dose dependent | rect. | 14 | 6 |
| 638 | 658.89 | humidity | 50 | 10 | > th | dose dependent | rect. | 16 | 20 |
| 660 | 659.73 | humidity | 70 | 10 | > th | dose independent | rect. | 11 | 23 |
| 694 | 660.61 | radiation | 1 | 10 | > th | dose independent | rect. | 11 | 8 |
| 706 | 660.62 | humidity | 80 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 708 | 660.69 | humidity | 70 | 10 | > th | dose independent | rect. | 16 | 6 |
| 748 | 662.10 | humidity | 50 | 270 | > th | dose dependent | rect. | 15 | 4 |
| 766 | 662.61 | temperature | 30 | 270 | < th | dose independent | rect. | 14 | 19 |
| 816 | 663.20 | radiation | 1 | 10 | < th | dose independent | rect. | 6 | 16 |
| 823 | 663.37 | radiation | 40 | 270 | < th | dose dependent | rect. | 14 | 19 |
| 849 | 663.59 | radiation | 1 | 10 | < th | dose independent | rect. | 11 | 11 |
| 882 | 664.54 | humidity | 70 | 10 | > th | dose independent | rect. | 23 | 23 |
| 906 | 664.84 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 17 |
| 962 | 666.11 | humidity | 80 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 963 | 666.16 | humidity | 90 | 270 | < th | dose dependent | rect. | 9 | 6 |