Os02g0190600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Lycopene cyclase, beta and epsilon family protein.
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Os02g0190600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Lycopene cyclase, beta and epsilon family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 83.28 | 0.429 | 12.8 | 0.763 | 0.531 | -0.875 | -0.726 | 0.888 | -0.284 | 17.7 | 21.6 | 2500 | -- | -- |
| 84.97 | 0.429 | 12.9 | 0.6 | 0.549 | -0.987 | -0.659 | -- | -0.353 | 17.5 | 21.4 | 2588 | -- | -- |
| 84.57 | 0.428 | 12.8 | 0.774 | 0.527 | -0.877 | -- | 0.903 | -0.285 | 17.7 | 21.62 | 2499 | -- | -- |
| 86.06 | 0.432 | 12.9 | 0.55 | 0.521 | -0.982 | -- | -- | -0.35 | 17.6 | 21.3 | 2550 | -- | -- |
| 98.67 | 0.463 | 12.8 | 0.757 | -- | -0.915 | -- | 0.837 | -0.297 | -- | 21.52 | 2607 | -- | -- |
| 110.03 | 0.492 | 12.9 | 0.0519 | 0.558 | -- | -0.795 | -- | -0.642 | 17.2 | -- | -- | -- | -- |
| 111.6 | 0.495 | 12.9 | 0.0528 | 0.552 | -- | -- | -- | -0.646 | 17.2 | -- | -- | -- | -- |
| 100 | 0.466 | 12.9 | 0.542 | -- | -0.99 | -- | -- | -0.359 | -- | 21.31 | 2612 | -- | -- |
| 87.96 | 0.437 | 12.9 | -- | 0.52 | -0.742 | -- | -- | -0.429 | 17.8 | 22.2 | 1153 | -- | -- |
| 127.57 | 0.528 | 12.9 | 0.0333 | -- | -- | -- | -- | -0.66 | -- | -- | -- | -- | -- |
| 111.68 | 0.494 | 12.9 | -- | 0.551 | -- | -- | -- | -0.651 | 17.2 | -- | -- | -- | -- |
| 101.84 | 0.47 | 12.9 | -- | -- | -0.768 | -- | -- | -0.432 | -- | 22.27 | 1183 | -- | -- |
| 127.6 | 0.527 | 12.9 | -- | -- | -- | -- | -- | -0.663 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 76.16 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 20 |
| 19 | 79.03 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 32 | 79.51 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 3 |
| 105 | 80.67 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 138 | 81.03 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 174 | 81.38 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 192 | 81.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 200 | 81.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 205 | 81.56 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 20 |
| 281 | 82.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 303 | 82.16 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 377 | 82.55 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 393 | 82.64 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 419 | 82.76 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 456 | 82.96 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 461 | 82.98 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 462 | 82.98 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 464 | 82.99 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 466 | 83.00 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 558 | 83.30 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 693 | 83.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 14 |
| 860 | 84.09 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |