Os02g0190500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0190500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Protein kinase domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 97.34 | 0.464 | 3.68 | -0.604 | 0.246 | 0.951 | -0.685 | -1.98 | -0.251 | 21.6 | 21.52 | 1013 | -- | -- |
| 100.75 | 0.467 | 3.72 | -0.759 | 0.278 | 1.42 | -0.477 | -- | -0.279 | 21.4 | 21.32 | 936 | -- | -- |
| 98.87 | 0.463 | 3.69 | -0.591 | 0.225 | 0.975 | -- | -1.89 | -0.262 | 21.6 | 21.3 | 1136 | -- | -- |
| 101.46 | 0.469 | 3.72 | -0.736 | 0.264 | 1.44 | -- | -- | -0.284 | 22 | 21.21 | 1016 | -- | -- |
| 101.06 | 0.468 | 3.67 | -0.569 | -- | 0.945 | -- | -2.3 | -0.255 | -- | 21 | 1358 | -- | -- |
| 119.32 | 0.512 | 3.75 | -1.11 | 0.188 | -- | -0.536 | -- | -0.444 | 19.9 | -- | -- | -- | -- |
| 120.09 | 0.513 | 3.75 | -1.1 | 0.189 | -- | -- | -- | -0.445 | 20.6 | -- | -- | -- | -- |
| 101.38 | 0.469 | 3.71 | -0.554 | -- | 1.34 | -- | -- | -0.266 | -- | 19.41 | 3195 | -- | -- |
| 105 | 0.477 | 3.71 | -- | 0.191 | 1.81 | -- | -- | -0.151 | 22.7 | 20.08 | 3695 | -- | -- |
| 122.1 | 0.516 | 3.75 | -1.1 | -- | -- | -- | -- | -0.447 | -- | -- | -- | -- | -- |
| 151.93 | 0.577 | 3.72 | -- | 0.194 | -- | -- | -- | -0.323 | 20.2 | -- | -- | -- | -- |
| 102.5 | 0.472 | 3.68 | -- | -- | 2.03 | -- | -- | -0.142 | -- | 19.4 | 7389 | -- | -- |
| 154 | 0.579 | 3.72 | -- | -- | -- | -- | -- | -0.325 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 97.92 | temperature | 10 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 3 | 98.61 | humidity | 50 | 43200 | < th | dose dependent | rect. | 19 | 3 |
| 9 | 98.62 | humidity | 50 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 16 | 98.87 | temperature | 20 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 20 | 98.97 | temperature | 20 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 23 | 99.00 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 32 | 99.05 | temperature | 20 | 30 | > th | dose independent | rect. | 3 | 23 |
| 34 | 99.06 | humidity | 50 | 43200 | < th | dose dependent | rect. | 17 | 5 |
| 40 | 99.07 | humidity | 50 | 43200 | < th | dose dependent | rect. | 17 | 15 |
| 45 | 99.10 | humidity | 60 | 43200 | < th | dose independent | rect. | 21 | 3 |
| 51 | 99.13 | temperature | 20 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 56 | 99.15 | temperature | 20 | 1440 | < th | dose dependent | sin | 14 | NA |
| 57 | 99.16 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 7 |
| 62 | 99.17 | humidity | 60 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 84 | 99.23 | temperature | 20 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 106 | 99.30 | humidity | 60 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 109 | 99.32 | humidity | 60 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 110 | 99.32 | humidity | 60 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 115 | 99.33 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 17 |
| 120 | 99.34 | humidity | 50 | 43200 | < th | dose dependent | sin | 12 | NA |
| 122 | 99.35 | temperature | 15 | 4320 | < th | dose independent | rect. | 2 | 8 |
| 123 | 99.35 | humidity | 60 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 124 | 99.36 | temperature | 15 | 4320 | < th | dose independent | rect. | 2 | 4 |
| 125 | 99.36 | temperature | 20 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 155 | 99.40 | humidity | 50 | 43200 | < th | dose dependent | rect. | 19 | 13 |
| 168 | 99.42 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 3 |
| 187 | 99.46 | humidity | 60 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 210 | 99.49 | humidity | 50 | 43200 | < th | dose dependent | rect. | 14 | 19 |
| 224 | 99.53 | temperature | 20 | 720 | < th | dose independent | rect. | 2 | 17 |
| 237 | 99.54 | temperature | 20 | 4320 | < th | dose dependent | rect. | 3 | 7 |
| 251 | 99.56 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 22 |
| 258 | 99.58 | temperature | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 272 | 99.59 | temperature | 20 | 720 | < th | dose independent | rect. | 2 | 19 |
| 288 | 99.61 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 304 | 99.64 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 21 |
| 314 | 99.65 | humidity | 50 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 319 | 99.65 | temperature | 20 | 1440 | < th | dose dependent | rect. | 22 | 23 |
| 327 | 99.66 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 362 | 99.70 | temperature | 20 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 387 | 99.73 | humidity | 50 | 43200 | < th | dose dependent | rect. | 14 | 8 |
| 458 | 99.79 | temperature | 20 | 4320 | < th | dose dependent | sin | 5 | NA |
| 459 | 99.79 | humidity | 50 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 526 | 99.87 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 21 |
| 539 | 99.88 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 20 |
| 565 | 99.91 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 578 | 99.92 | temperature | 15 | 4320 | > th | dose independent | rect. | 2 | 6 |
| 579 | 99.92 | temperature | 15 | 4320 | > th | dose independent | rect. | 2 | 8 |
| 581 | 99.92 | humidity | 50 | 43200 | < th | dose independent | rect. | 17 | 15 |
| 689 | 100.01 | humidity | 50 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 697 | 100.02 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 729 | 100.05 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 23 |
| 735 | 100.06 | humidity | 50 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 748 | 100.07 | humidity | 50 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 763 | 100.09 | temperature | 20 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 780 | 100.10 | humidity | 50 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 782 | 100.10 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 23 |
| 800 | 100.12 | temperature | 20 | 720 | < th | dose independent | sin | 2 | NA |
| 802 | 100.12 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 13 |
| 804 | 100.12 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 21 |
| 809 | 100.13 | temperature | 15 | 4320 | > th | dose independent | rect. | 2 | 11 |
| 839 | 100.15 | humidity | 50 | 43200 | > th | dose independent | rect. | 17 | 12 |
| 928 | 100.20 | temperature | 15 | 4320 | < th | dose independent | sin | 5 | NA |
| 929 | 100.20 | humidity | 50 | 43200 | < th | dose independent | sin | 11 | NA |