Os02g0189500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os02g0189500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.31 | 0.368 | 9.02 | 0.716 | 0.728 | -0.0103 | 0.294 | 4.3 | 0.241 | 8.69 | 30.1 | 2668 | -- | -- |
| 62.65 | 0.369 | 9.11 | -0.0893 | 0.759 | 0.505 | 0.279 | -- | 0.199 | 8.39 | 29.8 | 4834 | -- | -- |
| 61.53 | 0.365 | 9.02 | 0.768 | 0.724 | -0.0543 | -- | 4.61 | 0.234 | 8.63 | 30.2 | 2749 | -- | -- |
| 62.89 | 0.369 | 9.12 | -0.0903 | 0.757 | 0.503 | -- | -- | 0.196 | 8.43 | 29.8 | 4800 | -- | -- |
| 90.72 | 0.444 | 9.01 | 1.01 | -- | -0.182 | -- | 5.5 | 0.251 | -- | 29.93 | 2834 | -- | -- |
| 72.73 | 0.4 | 9.14 | 0.0435 | 0.725 | -- | 0.225 | -- | 0.125 | 8.36 | -- | -- | -- | -- |
| 72.89 | 0.4 | 9.14 | 0.0502 | 0.725 | -- | -- | -- | 0.125 | 8.34 | -- | -- | -- | -- |
| 93.62 | 0.451 | 9.14 | -0.0649 | -- | 0.476 | -- | -- | 0.212 | -- | 31.42 | 4376 | -- | -- |
| 63.09 | 0.37 | 9.12 | -- | 0.758 | 0.494 | -- | -- | 0.205 | 8.43 | 29.85 | 4800 | -- | -- |
| 102.05 | 0.472 | 9.15 | 0.0546 | -- | -- | -- | -- | 0.133 | -- | -- | -- | -- | -- |
| 72.95 | 0.4 | 9.14 | -- | 0.725 | -- | -- | -- | 0.119 | 8.33 | -- | -- | -- | -- |
| 92.35 | 0.448 | 9.14 | -- | -- | 0.432 | -- | -- | 0.173 | -- | 29.9 | 5693 | -- | -- |
| 102.13 | 0.472 | 9.16 | -- | -- | -- | -- | -- | 0.127 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.65 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 3 | 60.83 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 5 | 60.84 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 6 | 60.84 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 10 |
| 8 | 60.84 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 18 |
| 19 | 60.92 | temperature | 30 | 1440 | < th | dose independent | sin | 7 | NA |
| 21 | 60.96 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 24 | 61.01 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 65 | 61.11 | temperature | 30 | 1440 | > th | dose independent | sin | 6 | NA |
| 141 | 61.32 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 182 | 61.37 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 235 | 61.39 | temperature | 25 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 255 | 61.40 | temperature | 25 | 4320 | > th | dose dependent | rect. | 2 | 5 |
| 358 | 61.57 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 450 | 61.57 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 452 | 61.58 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 455 | 61.58 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 17 |
| 464 | 61.58 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 20 |
| 475 | 61.59 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 524 | 61.59 | temperature | 30 | 1440 | > th | dose dependent | sin | 6 | NA |
| 623 | 61.69 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 625 | 61.69 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 656 | 61.76 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 665 | 61.78 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 747 | 61.85 | temperature | 25 | 4320 | > th | dose independent | rect. | 3 | 5 |
| 792 | 61.94 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 796 | 61.95 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 804 | 61.96 | temperature | 30 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 832 | 61.99 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 5 |
| 866 | 62.02 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 885 | 62.02 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 14 |