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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0189400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Nitrate-induced NOI family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.19 (0.0541) R2 : 0.581
β1 : -4.25 (0.204) R2dD : 0.447 R2D : 0.207
β2 : 1.9 (0.137) R2dC : 0.191 R2C : 0.066
β3 : -2.16 (0.306) R2dE : 0.0562 R2E : -0.157
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.56 (0.119) R2dN8 : 0.23 R2N8 : 0.0191
σ : 1
deviance : 462.68
__
_____
C
peak time of C : 2.51
E
wheather : temperature
threshold : 22.3
memory length : 24
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
462.44 1.01 5.22 -4.44 1.9 -1.71 -0.953 1.36 -1.65 2.56 23.78 14 -- --
462.13 1 5.18 -4.18 1.87 -1.95 -0.551 -- -1.53 2.55 22.3 13 -- --
464.13 1.01 5.19 -4.27 1.9 -1.97 -- 0.265 -1.59 2.48 22.9 13 -- --
462.68 1 5.19 -4.25 1.9 -2.16 -- -- -1.56 2.51 22.3 24 -- --
654.66 1.19 5.14 -4.01 -- -1.71 -- 0.231 -1.36 -- 19.1 29 -- --
511.95 1.06 5.13 -3.86 1.65 -- -0.559 -- -1.33 2.82 -- -- -- --
512.99 1.06 5.13 -3.84 1.64 -- -- -- -1.33 2.76 -- -- -- --
654.57 1.19 5.14 -4 -- -1.83 -- -- -1.35 -- 19 24 -- --
900.82 1.41 5.04 -- 1.61 -0.378 -- -- -0.931 2.68 22.3 17 -- --
669.59 1.21 5.12 -3.77 -- -- -- -- -1.28 -- -- -- -- --
902.52 1.41 5.03 -- 1.57 -- -- -- -0.897 2.73 -- -- -- --
825.04 1.34 4.87 -- -- 2.39 -- -- -0.15 -- 36.11 47520 -- --
1045.38 1.51 5.03 -- -- -- -- -- -0.864 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 458.85 temperature 15 720 > th dose dependent rect. 16 17
7 460.98 wind 9 43200 > th dose dependent rect. 18 6
12 461.41 humidity 90 14400 > th dose dependent rect. 21 5
13 461.44 temperature 15 720 > th dose dependent rect. 17 12
17 461.84 wind 9 43200 > th dose dependent rect. 18 12
20 461.91 wind 9 43200 > th dose independent rect. 18 6
25 462.10 wind 9 43200 > th dose dependent rect. 19 2
26 462.15 wind 9 43200 > th dose dependent rect. 18 4
27 462.18 wind 7 43200 > th dose dependent rect. 14 20
29 462.24 wind 9 43200 < th dose independent rect. 18 6
31 462.35 wind 5 43200 > th dose dependent rect. 18 2
40 462.66 humidity 70 43200 > th dose dependent rect. 12 1
43 462.71 temperature 15 720 > th dose dependent sin 12 NA
54 463.04 wind 5 43200 < th dose independent rect. 15 10
58 463.17 wind 5 43200 < th dose independent rect. 14 13
62 463.20 wind 5 43200 > th dose independent rect. 14 11
63 463.21 humidity 80 43200 > th dose dependent rect. 9 1
73 463.33 wind 9 43200 > th dose independent rect. 13 21
75 463.37 wind 9 43200 > th dose independent rect. 18 12
80 463.44 humidity 90 14400 > th dose dependent rect. 23 1
85 463.49 wind 9 43200 < th dose independent rect. 13 21
89 463.56 wind 9 43200 < th dose independent rect. 18 3
94 463.64 humidity 90 43200 < th dose independent rect. 8 1
100 463.72 humidity 90 43200 < th dose independent rect. 6 4
101 463.73 humidity 90 43200 > th dose independent rect. 6 4
103 463.74 humidity 90 43200 > th dose independent rect. 8 2
122 463.89 wind 3 43200 > th dose dependent rect. 14 12
126 463.94 wind 5 43200 > th dose independent rect. 18 2
140 464.05 wind 9 43200 < th dose independent rect. 18 12
156 464.20 humidity 90 43200 > th dose dependent rect. 5 8
158 464.20 temperature 25 10 < th dose dependent rect. 22 23
159 464.22 wind 9 43200 > th dose independent rect. 18 3
172 464.31 wind 7 43200 < th dose independent rect. 14 19
173 464.31 wind 9 43200 > th dose dependent sin 14 NA
177 464.33 wind 7 43200 > th dose independent rect. 20 1
178 464.34 wind 5 43200 > th dose independent rect. 15 6
190 464.37 humidity 90 43200 > th dose independent rect. 4 9
193 464.39 wind 5 43200 < th dose independent rect. 18 3
194 464.39 wind 5 43200 < th dose independent rect. 16 5
210 464.46 humidity 90 43200 > th dose dependent rect. 6 4
220 464.51 wind 7 43200 > th dose independent rect. 14 19
242 464.61 wind 5 43200 < th dose independent sin 16 NA
282 464.76 radiation 1 43200 > th dose independent rect. 4 8
294 464.78 radiation 1 43200 < th dose independent rect. 22 14
301 464.79 radiation 1 43200 < th dose independent rect. 24 12
304 464.80 radiation 1 43200 < th dose independent rect. 4 8
345 464.90 wind 5 43200 > th dose independent sin 16 NA
356 464.92 humidity 90 43200 > th dose independent rect. 6 1
361 464.95 humidity 90 14400 > th dose dependent sin 12 NA
365 464.98 wind 3 43200 > th dose dependent sin 16 NA
368 464.98 wind 7 43200 > th dose dependent rect. 23 22
408 465.08 humidity 80 43200 < th dose independent rect. 9 5
417 465.08 temperature 25 10 < th dose dependent rect. 5 23
426 465.13 radiation 1 43200 > th dose independent sin 6 NA
432 465.15 wind 9 43200 > th dose independent sin 12 NA
447 465.16 radiation 1 43200 < th dose independent sin 7 NA
473 465.21 wind 7 43200 > th dose dependent rect. 5 16
474 465.21 temperature 25 10 < th dose dependent rect. 14 22
511 465.24 wind 7 43200 > th dose dependent rect. 2 19
564 465.34 atmosphere 1015 43200 < th dose independent rect. 3 1
610 465.39 temperature 20 1440 > th dose dependent rect. 14 9
627 465.43 temperature 15 720 > th dose dependent rect. 17 7
634 465.44 wind 7 43200 > th dose dependent rect. 5 22
651 465.50 wind 7 43200 > th dose dependent rect. 5 20
652 465.51 humidity 80 43200 > th dose independent rect. 9 4
697 465.59 atmosphere 1015 43200 > th dose independent rect. 3 2
700 465.59 wind 7 43200 > th dose dependent rect. 18 23
721 465.61 wind 7 43200 > th dose dependent rect. 2 23
747 465.67 wind 7 43200 > th dose dependent no NA NA
785 465.73 wind 7 43200 > th dose dependent rect. 16 23
786 465.74 humidity 80 43200 < th dose independent rect. 12 1
812 465.79 radiation 1 43200 > th dose independent rect. 18 11
863 465.88 wind 7 43200 > th dose dependent rect. 20 23
864 465.89 wind 9 43200 < th dose independent sin 12 NA
881 465.92 radiation 1 43200 < th dose independent rect. 17 12
900 465.96 wind 9 43200 > th dose independent rect. 17 22
918 465.99 wind 9 43200 > th dose dependent sin 18 NA
936 466.02 wind 9 43200 < th dose dependent rect. 18 3
985 466.12 temperature 20 1440 > th dose dependent sin 17 NA
997 466.15 radiation 1 4320 < th dose dependent rect. 18 17