Os02g0189000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chloroplast 30S ribosomal protein S21 (Fragment).
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Os02g0189000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Chloroplast 30S ribosomal protein S21 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.66 | 0.314 | 13.8 | -0.928 | 0.94 | -4.75 | -0.0428 | -12.1 | -0.532 | 2.39 | 14.95 | 4871 | -- | -- |
| 50.16 | 0.332 | 14 | -0.732 | 0.922 | 0.558 | 0.0919 | -- | -0.591 | 2.41 | 14.95 | 4871 | -- | -- |
| 44.67 | 0.311 | 13.8 | -0.927 | 0.94 | -4.75 | -- | -12.1 | -0.532 | 2.39 | 14.95 | 4872 | -- | -- |
| 44.94 | 0.312 | 14 | -0.476 | 0.934 | 0.799 | -- | -- | -0.532 | 2.47 | 15.4 | 6288 | -- | -- |
| 96.87 | 0.458 | 13.8 | -0.892 | -- | -4.7 | -- | -11.8 | -0.516 | -- | 15 | 4842 | -- | -- |
| 50.75 | 0.334 | 14.1 | -0.755 | 0.93 | -- | 0.028 | -- | -0.597 | 2.39 | -- | -- | -- | -- |
| 50.75 | 0.334 | 14.1 | -0.756 | 0.93 | -- | -- | -- | -0.597 | 2.39 | -- | -- | -- | -- |
| 96 | 0.456 | 14 | -0.435 | -- | 0.82 | -- | -- | -0.508 | -- | 15.1 | 6113 | -- | -- |
| 48.22 | 0.323 | 14 | -- | 0.934 | 1.15 | -- | -- | -0.436 | 2.38 | 16.3 | 7097 | -- | -- |
| 101.87 | 0.472 | 14 | -0.716 | -- | -- | -- | -- | -0.574 | -- | -- | -- | -- | -- |
| 65.8 | 0.379 | 14 | -- | 0.915 | -- | -- | -- | -0.513 | 2.38 | -- | -- | -- | -- |
| 99.22 | 0.464 | 14 | -- | -- | 1.18 | -- | -- | -0.43 | -- | 15.2 | 6114 | -- | -- |
| 115.4 | 0.501 | 14 | -- | -- | -- | -- | -- | -0.494 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.93 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 2 | 42.96 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 19 |
| 3 | 42.97 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 18 |
| 4 | 42.98 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 17 |
| 6 | 43.00 | humidity | 80 | 43200 | < th | dose independent | rect. | 11 | 20 |
| 17 | 43.17 | humidity | 80 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 19 | 43.22 | humidity | 70 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 49 | 43.55 | humidity | 80 | 43200 | > th | dose independent | sin | 16 | NA |
| 51 | 43.56 | humidity | 70 | 43200 | > th | dose dependent | rect. | 16 | 15 |
| 52 | 43.57 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 22 |
| 54 | 43.59 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 22 |
| 77 | 43.66 | humidity | 70 | 43200 | > th | dose dependent | sin | 13 | NA |
| 78 | 43.66 | humidity | 70 | 43200 | > th | dose dependent | rect. | 17 | 9 |
| 102 | 43.74 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 114 | 43.77 | humidity | 80 | 43200 | < th | dose independent | sin | 16 | NA |
| 130 | 43.83 | humidity | 80 | 43200 | > th | dose independent | no | NA | NA |
| 151 | 43.90 | humidity | 80 | 43200 | > th | dose independent | rect. | 16 | 23 |
| 158 | 43.92 | wind | 1 | 43200 | < th | dose independent | rect. | 5 | 20 |
| 168 | 43.96 | humidity | 80 | 43200 | < th | dose independent | no | NA | NA |
| 174 | 43.97 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 23 |
| 178 | 43.98 | humidity | 80 | 43200 | > th | dose independent | rect. | 14 | 23 |
| 244 | 44.10 | humidity | 80 | 43200 | < th | dose independent | rect. | 5 | 23 |
| 258 | 44.12 | humidity | 80 | 43200 | < th | dose independent | rect. | 2 | 23 |
| 266 | 44.13 | humidity | 80 | 43200 | < th | dose independent | rect. | 17 | 23 |
| 347 | 44.24 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 21 |
| 349 | 44.24 | humidity | 70 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 354 | 44.25 | temperature | 10 | 43200 | > th | dose independent | rect. | 7 | 5 |
| 362 | 44.26 | humidity | 80 | 43200 | < th | dose independent | rect. | 24 | 15 |
| 404 | 44.32 | temperature | 10 | 43200 | > th | dose independent | rect. | 9 | 12 |
| 414 | 44.33 | temperature | 10 | 43200 | > th | dose independent | rect. | 7 | 8 |
| 447 | 44.36 | humidity | 80 | 43200 | > th | dose independent | rect. | 24 | 15 |
| 467 | 44.39 | temperature | 10 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 490 | 44.42 | humidity | 70 | 43200 | > th | dose dependent | rect. | 3 | 4 |
| 500 | 44.43 | humidity | 70 | 43200 | > th | dose dependent | rect. | 1 | 7 |
| 507 | 44.44 | temperature | 10 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 509 | 44.44 | temperature | 10 | 43200 | > th | dose independent | rect. | 7 | 14 |
| 510 | 44.44 | temperature | 10 | 43200 | > th | dose independent | rect. | 9 | 16 |
| 524 | 44.45 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 15 | 23 |
| 526 | 44.45 | temperature | 10 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 550 | 44.46 | temperature | 10 | 43200 | > th | dose independent | rect. | 22 | 3 |
| 551 | 44.46 | temperature | 10 | 43200 | > th | dose independent | rect. | 17 | 8 |
| 555 | 44.46 | temperature | 10 | 43200 | > th | dose independent | rect. | 7 | 18 |
| 557 | 44.46 | temperature | 15 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 558 | 44.46 | temperature | 15 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 562 | 44.46 | temperature | 15 | 14400 | < th | dose dependent | rect. | 11 | 6 |
| 611 | 44.48 | temperature | 15 | 14400 | < th | dose dependent | rect. | 12 | 4 |
| 655 | 44.50 | temperature | 10 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 656 | 44.50 | temperature | 10 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 682 | 44.51 | radiation | 20 | 4320 | < th | dose independent | rect. | 21 | 9 |
| 695 | 44.51 | humidity | 50 | 43200 | > th | dose dependent | rect. | 1 | 7 |
| 707 | 44.52 | temperature | 10 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 708 | 44.52 | temperature | 10 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 828 | 44.55 | temperature | 10 | 43200 | > th | dose independent | rect. | 14 | 11 |
| 833 | 44.55 | humidity | 80 | 43200 | > th | dose independent | rect. | 1 | 13 |
| 868 | 44.56 | temperature | 10 | 43200 | > th | dose independent | rect. | 7 | 11 |
| 882 | 44.56 | temperature | 10 | 43200 | < th | dose dependent | sin | 20 | NA |
| 904 | 44.57 | temperature | 15 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 905 | 44.57 | radiation | 1 | 4320 | > th | dose independent | rect. | 9 | 1 |