Os02g0188600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0188600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 447.13 | 0.993 | 3.4 | 0.097 | 0.213 | -1.26 | -1.56 | -0.644 | -0.222 | 0.431 | 20.5 | 1590 | -- | -- |
| 447.96 | 0.986 | 3.39 | 0.216 | 0.208 | -1.18 | -1.49 | -- | -0.201 | 0.326 | 20.5 | 1590 | -- | -- |
| 457.38 | 0.996 | 3.4 | 0.159 | 0.22 | -1.31 | -- | -0.703 | -0.213 | 23.6 | 20.43 | 1614 | -- | -- |
| 458.26 | 0.997 | 3.38 | 0.291 | 0.22 | -1.21 | -- | -- | -0.184 | 23.5 | 20.5 | 1614 | -- | -- |
| 460.48 | 0.999 | 3.4 | 0.179 | -- | -1.3 | -- | -0.657 | -0.209 | -- | 20.49 | 1615 | -- | -- |
| 477.88 | 1.02 | 3.45 | -0.279 | 0.21 | -- | -1.6 | -- | -0.465 | 0.0818 | -- | -- | -- | -- |
| 488.91 | 1.04 | 3.44 | -0.215 | 0.219 | -- | -- | -- | -0.456 | 23.4 | -- | -- | -- | -- |
| 461.29 | 1 | 3.38 | 0.302 | -- | -1.21 | -- | -- | -0.182 | -- | 20.5 | 1615 | -- | -- |
| 460.08 | 0.999 | 3.39 | -- | 0.22 | -1.07 | -- | -- | -0.241 | 23.4 | 20.5 | 1614 | -- | -- |
| 491.91 | 1.04 | 3.44 | -0.209 | -- | -- | -- | -- | -0.454 | -- | -- | -- | -- | -- |
| 490.13 | 1.04 | 3.44 | -- | 0.217 | -- | -- | -- | -0.432 | 23.3 | -- | -- | -- | -- |
| 463.18 | 1 | 3.39 | -- | -- | -1.07 | -- | -- | -0.237 | -- | 20.51 | 1590 | -- | -- |
| 493.07 | 1.04 | 3.43 | -- | -- | -- | -- | -- | -0.431 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 438.39 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 4 |
| 2 | 438.39 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 7 |
| 17 | 439.80 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 11 |
| 20 | 439.94 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 13 |
| 23 | 440.20 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 9 |
| 25 | 440.26 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 29 | 440.52 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 32 | 440.70 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 7 |
| 34 | 440.73 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 12 |
| 38 | 440.79 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 49 | 441.35 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 17 |
| 62 | 441.96 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 17 |
| 64 | 442.00 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 95 | 442.44 | temperature | 20 | 90 | > th | dose independent | sin | 11 | NA |
| 108 | 442.86 | temperature | 25 | 4320 | < th | dose dependent | rect. | 12 | 1 |
| 122 | 443.37 | temperature | 20 | 90 | < th | dose independent | sin | 11 | NA |
| 146 | 444.09 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 12 |
| 232 | 445.58 | temperature | 30 | 90 | < th | dose dependent | rect. | 14 | 20 |
| 256 | 445.87 | temperature | 25 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 257 | 445.88 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 276 | 446.12 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 19 |
| 308 | 446.45 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 16 |
| 311 | 446.47 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 22 |
| 314 | 446.53 | temperature | 20 | 90 | > th | dose independent | rect. | 10 | 23 |
| 322 | 446.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 19 |
| 323 | 446.62 | temperature | 20 | 4320 | > th | dose independent | sin | 19 | NA |
| 346 | 446.78 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 5 |
| 350 | 446.82 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 370 | 446.95 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 22 |
| 387 | 447.12 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 13 |
| 401 | 447.24 | temperature | 25 | 30 | < th | dose dependent | rect. | 9 | 22 |
| 411 | 447.30 | temperature | 25 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 413 | 447.30 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 6 |
| 425 | 447.35 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 484 | 447.64 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 5 |
| 489 | 447.67 | temperature | 25 | 4320 | < th | dose dependent | rect. | 11 | 7 |
| 512 | 447.82 | temperature | 25 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 519 | 447.88 | temperature | 20 | 10 | > th | dose independent | rect. | 7 | 23 |
| 524 | 447.89 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 1 |
| 533 | 447.98 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 5 |
| 536 | 447.99 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 10 |
| 541 | 448.03 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 5 |
| 554 | 448.09 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 12 |
| 557 | 448.12 | temperature | 20 | 90 | < th | dose independent | rect. | 9 | 21 |
| 580 | 448.25 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 602 | 448.37 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 642 | 448.62 | temperature | 20 | 1440 | > th | dose independent | sin | 23 | NA |
| 677 | 448.77 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 678 | 448.78 | temperature | 25 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 683 | 448.81 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 3 |
| 688 | 448.83 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 3 |
| 695 | 448.86 | temperature | 20 | 4320 | < th | dose independent | sin | 19 | NA |
| 747 | 449.04 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 753 | 449.05 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 15 |
| 754 | 449.06 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 21 |
| 767 | 449.10 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 816 | 449.20 | temperature | 25 | 1440 | < th | dose dependent | sin | 22 | NA |
| 825 | 449.22 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 854 | 449.27 | temperature | 20 | 1440 | > th | dose dependent | sin | 18 | NA |
| 860 | 449.28 | temperature | 20 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 885 | 449.33 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 889 | 449.34 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 3 |
| 902 | 449.35 | temperature | 20 | 10 | > th | dose dependent | rect. | 19 | 11 |
| 984 | 449.48 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |