Os02g0188500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ubiquitin domain containing protein.
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Os02g0188500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ubiquitin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 258.79 | 0.756 | 4.99 | -0.27 | 2.46 | 3.3 | -0.783 | 0.268 | -0.635 | 20.4 | 22.6 | 1612 | -- | -- |
| 258.72 | 0.749 | 4.98 | -0.212 | 2.47 | 3.34 | -0.748 | -- | -0.63 | 20.4 | 22.39 | 1610 | -- | -- |
| 260.38 | 0.752 | 4.99 | -0.233 | 2.46 | 3.45 | -- | 0.37 | -0.644 | 20.4 | 22.3 | 1611 | -- | -- |
| 260.51 | 0.752 | 4.99 | -0.192 | 2.46 | 3.37 | -- | -- | -0.638 | 20.4 | 22.3 | 1612 | -- | -- |
| 573.97 | 1.12 | 4.95 | -0.573 | -- | 3.46 | -- | 0.385 | -0.791 | -- | 22.3 | 1611 | -- | -- |
| 364.25 | 0.895 | 5.1 | -1.17 | 2.49 | -- | -1.04 | -- | -1.13 | 20.4 | -- | -- | -- | -- |
| 367.67 | 0.898 | 5.1 | -1.14 | 2.49 | -- | -- | -- | -1.13 | 20.4 | -- | -- | -- | -- |
| 574.1 | 1.12 | 4.95 | -0.54 | -- | 3.4 | -- | -- | -0.785 | -- | 22.3 | 1612 | -- | -- |
| 261.29 | 0.753 | 4.98 | -- | 2.47 | 3.49 | -- | -- | -0.603 | 20.4 | 22.3 | 1614 | -- | -- |
| 712.04 | 1.25 | 5.03 | -1.15 | -- | -- | -- | -- | -1.15 | -- | -- | -- | -- | -- |
| 401.9 | 0.938 | 5.07 | -- | 2.49 | -- | -- | -- | -1 | 20.4 | -- | -- | -- | -- |
| 581.27 | 1.13 | 4.93 | -- | -- | 3.6 | -- | -- | -0.707 | -- | 22.3 | 1612 | -- | -- |
| 747.14 | 1.28 | 5 | -- | -- | -- | -- | -- | -1.03 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 260.81 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 19 |
| 6 | 261.32 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 19 |
| 34 | 262.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 14 |
| 49 | 262.80 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 14 |
| 84 | 263.45 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 96 | 263.59 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 22 |
| 111 | 263.84 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 22 |
| 124 | 264.02 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 128 | 264.03 | temperature | 20 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 133 | 264.09 | temperature | 20 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 135 | 264.11 | temperature | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 143 | 264.22 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 23 |
| 150 | 264.28 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 159 | 264.34 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 7 |
| 171 | 264.44 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 22 |
| 174 | 264.45 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 22 |
| 203 | 264.68 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 213 | 264.75 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 4 |
| 229 | 264.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 234 | 264.92 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 23 |
| 300 | 265.60 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 16 |
| 350 | 266.12 | temperature | 25 | 90 | < th | dose dependent | rect. | 8 | 21 |
| 367 | 266.29 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 12 |
| 372 | 266.35 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 382 | 266.45 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 12 |
| 393 | 266.58 | temperature | 25 | 10 | < th | dose dependent | rect. | 8 | 22 |
| 395 | 266.59 | temperature | 25 | 90 | < th | dose dependent | rect. | 8 | 23 |
| 446 | 266.93 | temperature | 25 | 1440 | < th | dose dependent | sin | 4 | NA |
| 474 | 267.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 9 |
| 543 | 267.69 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 22 |
| 559 | 267.79 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 20 |
| 572 | 267.90 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 22 |
| 584 | 267.98 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 18 |
| 597 | 268.07 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 599 | 268.07 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 613 | 268.13 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 674 | 268.58 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 4 |
| 750 | 269.19 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 768 | 269.36 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 3 |
| 780 | 269.44 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 798 | 269.56 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 803 | 269.58 | temperature | 25 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 816 | 269.68 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 820 | 269.70 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 824 | 269.72 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 827 | 269.74 | temperature | 25 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 855 | 269.93 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 913 | 270.38 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 942 | 270.57 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 3 |
| 948 | 270.58 | temperature | 20 | 1440 | < th | dose dependent | rect. | 21 | 9 |