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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0188400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.65 (0.0472) R2 : 0.678
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.17 (0.113) R2dC : 0.56 R2C : 0.564
β3 : -1.77 (0.153) R2dE : 0.0959 R2E : 0.106
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.351 (0.0996) R2dN8 : 0.0115 R2N8 : 0.0121
σ : 0.884
deviance : 360.43
__
_____
C
peak time of C : 0.904
E
wheather : temperature
threshold : 15.51
memory length : 6
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 20.2
open length of G : 16.5

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
348.07 0.877 5.66 -0.563 3.23 -1.69 -0.683 0.875 -0.416 0.923 14.51 23 20.1 16.1
348.49 0.869 5.67 -0.629 3.2 -1.71 -0.78 -- -0.434 0.913 14.95 7 20.2 16
349.44 0.877 5.66 -0.526 3.2 -1.71 -- 1.06 -0.408 0.878 14.99 22 20.1 16.1
350.97 0.873 5.67 -0.608 3.2 -1.67 -- -- -0.434 0.89 14.74 7 20.2 16.3
681.13 1.22 5.5 -0.609 -- -3.34 -- -2.19 -0.154 -- 13.19 7 0.717 18.3
407.62 0.947 5.72 -0.83 3.29 -- -0.373 -- -0.552 23.9 -- -- -- --
408.22 0.946 5.72 -0.815 3.29 -- -- -- -0.55 23.9 -- -- -- --
662.65 1.2 5.49 -0.302 -- -3.35 -- -- -0.0433 -- 14.03 8 0.926 18.1
360.43 0.884 5.65 -- 3.17 -1.77 -- -- -0.351 0.904 15.51 6 20.2 16.5
1090.61 1.54 5.65 -0.715 -- -- -- -- -0.507 -- -- -- -- --
425.71 0.965 5.7 -- 3.28 -- -- -- -0.459 23.9 -- -- -- --
551.11 1.09 5.58 -- -- -3.64 -- -- 0.0963 -- 13.71 6 4.97 14
1104.11 1.55 5.63 -- -- -- -- -- -0.427 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 348.93 temperature 15.0 30 > th dose dependent rect. 20 16
13 358.04 humidity 60.0 30 > th dose independent rect. 12 8
17 359.17 temperature 25.0 90 < th dose independent rect. 16 17
25 361.83 temperature 25.0 270 > th dose dependent rect. 20 12
26 362.12 radiation 10.0 43200 < th dose dependent rect. 21 7
32 362.90 humidity 60.0 30 > th dose independent rect. 3 17
36 363.89 temperature 30.0 10 < th dose dependent rect. 16 16
37 364.03 temperature 20.0 10 > th dose dependent rect. 18 18
38 364.22 humidity 50.0 10 > th dose dependent rect. 12 8
40 364.28 temperature 25.0 90 > th dose independent rect. 20 16
50 364.89 temperature 15.0 30 > th dose dependent rect. 20 7
51 364.98 temperature 25.0 270 < th dose independent rect. 14 15
52 365.05 temperature 30.0 30 < th dose independent rect. 12 8
54 365.08 wind 1.0 14400 < th dose dependent rect. 3 2
56 365.36 temperature 25.0 90 > th dose independent rect. 17 19
59 365.58 wind 1.0 14400 > th dose independent rect. 3 2
60 365.71 temperature 10.0 10 > th dose dependent rect. 5 22
68 366.01 wind 1.0 14400 < th dose independent rect. 3 2
75 366.07 humidity 60.0 30 > th dose independent rect. 1 19
77 366.10 humidity 90.0 30 < th dose independent rect. 8 17
82 366.39 temperature 25.0 270 > th dose independent rect. 18 14
83 366.43 temperature 25.0 270 > th dose independent sin 12 NA
84 366.44 temperature 30.0 4320 < th dose independent rect. 13 1
94 366.76 humidity 80.0 1440 > th dose independent rect. 8 4
95 366.85 temperature 25.0 4320 > th dose independent rect. 18 1
101 367.04 humidity 60.0 30 > th dose independent rect. 3 15
103 367.07 radiation 1.0 1440 > th dose independent rect. 16 22
104 367.09 humidity 70.0 1440 > th dose dependent rect. 8 2
106 367.13 radiation 1.0 1440 < th dose independent rect. 16 22
113 367.28 radiation 1.0 1440 < th dose independent rect. 4 14
116 367.30 radiation 1.0 1440 < th dose independent rect. 2 16
117 367.31 radiation 1.0 1440 < th dose independent rect. 16 15
121 367.35 radiation 1.0 1440 > th dose independent rect. 5 13
122 367.35 humidity 50.0 30 > th dose dependent rect. 3 17
142 367.49 radiation 1.0 1440 < th dose independent rect. 20 22
145 367.51 radiation 1.0 1440 > th dose independent rect. 16 15
158 367.66 humidity 80.0 1440 < th dose independent rect. 8 4
160 367.72 radiation 1.0 270 < th dose independent rect. 22 22
163 367.80 humidity 90.0 1440 < th dose dependent rect. 8 3
193 368.22 radiation 1.0 270 < th dose independent rect. 23 19
197 368.26 radiation 1.0 1440 < th dose independent sin 11 NA
198 368.26 radiation 10.0 43200 < th dose dependent rect. 21 5
206 368.31 radiation 1.0 1440 < th dose dependent rect. 4 14
208 368.32 temperature 25.0 4320 < th dose independent rect. 18 1
210 368.34 radiation 1.0 1440 < th dose dependent rect. 2 16
217 368.42 radiation 1.0 1440 > th dose independent sin 12 NA
221 368.46 temperature 20.0 10 > th dose dependent sin 8 NA
232 368.50 temperature 30.0 4320 > th dose independent rect. 13 1
238 368.54 radiation 1.0 1440 < th dose dependent rect. 19 23
254 368.74 humidity 60.0 1440 > th dose dependent rect. 8 5
272 368.86 radiation 1.0 1440 > th dose independent rect. 10 22
273 368.86 radiation 1.0 1440 < th dose independent rect. 10 22
292 368.97 radiation 1.0 1440 < th dose independent rect. 4 17
295 368.98 temperature 25.0 90 < th dose independent sin 10 NA
296 368.98 radiation 1.0 1440 < th dose independent rect. 2 19
310 369.03 temperature 30.0 270 < th dose dependent rect. 23 8
313 369.06 temperature 25.0 270 > th dose independent rect. 18 7
333 369.11 radiation 1.0 1440 < th dose independent sin 3 NA
344 369.13 temperature 30.0 10 < th dose dependent rect. 14 18
352 369.16 temperature 25.0 90 > th dose independent rect. 20 7
378 369.21 radiation 1.0 1440 > th dose independent no NA NA
428 369.22 radiation 1.0 1440 > th dose independent sin 3 NA
439 369.25 radiation 1.0 1440 < th dose independent no NA NA
468 369.44 temperature 25.0 270 > th dose independent rect. 20 5
479 369.55 radiation 1.0 270 < th dose dependent rect. 22 22
480 369.56 humidity 60.0 30 > th dose independent rect. 12 23
493 369.75 wind 1.0 43200 > th dose independent rect. 24 4
500 369.82 humidity 60.0 270 > th dose independent rect. 24 17
506 369.86 humidity 50.0 30 > th dose dependent rect. 1 19
510 369.92 humidity 50.0 30 > th dose dependent rect. 3 15
524 370.01 wind 7.0 30 < th dose independent rect. 20 16
540 370.20 temperature 15.0 10 > th dose dependent rect. 5 7
545 370.25 temperature 25.0 4320 > th dose independent rect. 18 6
564 370.47 temperature 25.0 4320 < th dose independent rect. 22 1
579 370.61 temperature 30.0 90 < th dose dependent rect. 13 20
583 370.65 temperature 30.0 30 < th dose independent rect. 3 17
584 370.69 temperature 25.0 270 > th dose dependent rect. 20 6
591 370.73 temperature 10.0 10 > th dose dependent sin 7 NA
600 370.86 humidity 60.0 30 > th dose independent rect. 12 19
605 370.88 temperature 25.0 4320 > th dose independent rect. 21 3
608 370.89 radiation 1.0 270 < th dose dependent rect. 23 19
612 370.92 temperature 25.0 4320 < th dose independent rect. 18 7
613 370.92 temperature 30.0 10 < th dose dependent rect. 12 22
617 370.94 humidity 60.0 30 > th dose independent rect. 12 17
625 370.98 radiation 1.0 1440 > th dose independent rect. 5 9
628 371.00 radiation 1.0 1440 < th dose independent rect. 4 10
637 371.04 radiation 1.0 1440 < th dose independent rect. 2 12
661 371.22 temperature 10.0 270 > th dose dependent rect. 17 8
662 371.22 temperature 15.0 10 > th dose dependent rect. 20 23
665 371.23 humidity 50.0 90 > th dose dependent rect. 23 21
685 371.32 temperature 10.0 30 > th dose dependent rect. 7 20
690 371.35 radiation 1.0 1440 < th dose dependent rect. 16 22
692 371.36 radiation 1.0 1440 < th dose independent rect. 20 18
721 371.52 temperature 15.0 30 > th dose dependent rect. 20 5
723 371.52 radiation 1.0 1440 < th dose dependent rect. 4 17
741 371.54 radiation 1.0 1440 < th dose dependent rect. 2 19
765 371.63 precipitation 0.1 30 < th dose independent rect. 20 16
770 371.63 precipitation 0.1 30 < th dose dependent rect. 20 16
773 371.63 radiation 1.0 1440 < th dose dependent rect. 9 22
793 371.66 wind 1.0 14400 < th dose independent rect. 22 7
795 371.66 radiation 1.0 1440 < th dose dependent sin 2 NA
838 371.76 temperature 15.0 14400 > th dose independent rect. 9 1
847 371.77 radiation 1.0 1440 < th dose dependent rect. 13 23
868 371.83 radiation 1.0 1440 < th dose dependent no NA NA
879 371.86 temperature 30.0 90 < th dose dependent rect. 1 8
883 371.87 radiation 1.0 14400 > th dose independent rect. 9 1
892 371.90 radiation 1.0 1440 < th dose dependent rect. 13 18
900 371.92 wind 9.0 14400 < th dose independent rect. 16 1
901 371.92 radiation 1.0 14400 < th dose independent rect. 9 1
927 372.00 radiation 1.0 1440 < th dose dependent rect. 15 16
970 372.17 temperature 10.0 10 > th dose dependent rect. 18 9