Os02g0187100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Virulence factor, pectin lyase fold family protein.
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Os02g0187100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Virulence factor, pectin lyase fold family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 129.48 | 0.535 | 10.6 | 0.712 | 1.64 | -1.13 | 0.547 | -2.51 | -0.128 | 20.6 | 20.9 | 1372 | -- | -- |
| 138.62 | 0.548 | 10.5 | 1.14 | 1.77 | -0.748 | 0.574 | -- | -0.00563 | 20.6 | 21.92 | 860 | -- | -- |
| 130.34 | 0.532 | 10.6 | 0.709 | 1.64 | -1.11 | -- | -2.41 | -0.124 | 20.6 | 21.01 | 1405 | -- | -- |
| 139.13 | 0.549 | 10.5 | 1.14 | 1.76 | -0.757 | -- | -- | 0.00193 | 20.7 | 21.91 | 859 | -- | -- |
| 279.26 | 0.778 | 10.5 | 0.591 | -- | -0.991 | -- | -2.37 | -0.148 | -- | 21.42 | 1524 | -- | -- |
| 161.32 | 0.595 | 10.5 | 0.884 | 1.63 | -- | 0.453 | -- | -0.232 | 20.5 | -- | -- | -- | -- |
| 161.97 | 0.596 | 10.5 | 0.87 | 1.63 | -- | -- | -- | -0.232 | 20.5 | -- | -- | -- | -- |
| 278.38 | 0.78 | 10.4 | 1.04 | -- | -0.707 | -- | -- | -0.0489 | -- | 22 | 1518 | -- | -- |
| 170.13 | 0.607 | 10.5 | -- | 1.72 | -0.505 | -- | -- | -0.156 | 20.6 | 22.3 | 759 | -- | -- |
| 311.16 | 0.824 | 10.5 | 0.864 | -- | -- | -- | -- | -0.247 | -- | -- | -- | -- | -- |
| 181.93 | 0.631 | 10.6 | -- | 1.63 | -- | -- | -- | -0.329 | 20.6 | -- | -- | -- | -- |
| 305.73 | 0.817 | 10.5 | -- | -- | -0.609 | -- | -- | -0.188 | -- | 22.2 | 1501 | -- | -- |
| 330.83 | 0.849 | 10.5 | -- | -- | -- | -- | -- | -0.343 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 126.81 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 2 | 127.50 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 3 | 127.60 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 6 | 129.48 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 19 |
| 7 | 129.54 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 22 |
| 10 | 129.71 | wind | 3 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 17 | 130.40 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 20 | 130.91 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 21 | 131.04 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 15 |
| 28 | 131.27 | temperature | 25 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 36 | 131.75 | temperature | 25 | 90 | < th | dose dependent | rect. | 24 | 21 |
| 41 | 131.87 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 22 |
| 43 | 131.95 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 44 | 132.08 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 47 | 132.18 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 12 |
| 48 | 132.27 | temperature | 20 | 270 | < th | dose independent | rect. | 24 | 22 |
| 49 | 132.28 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 18 |
| 56 | 132.53 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 57 | 132.55 | temperature | 20 | 720 | > th | dose independent | sin | 22 | NA |
| 75 | 132.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 79 | 132.91 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 23 |
| 80 | 132.91 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 18 |
| 84 | 133.00 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 19 |
| 96 | 133.08 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 99 | 133.09 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 18 |
| 101 | 133.12 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 104 | 133.13 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 123 | 133.28 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 126 | 133.29 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 150 | 133.46 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 159 | 133.52 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 162 | 133.54 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 165 | 133.55 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 10 |
| 193 | 133.71 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 196 | 133.72 | temperature | 20 | 720 | < th | dose independent | sin | 22 | NA |
| 221 | 133.83 | temperature | 10 | 10 | > th | dose dependent | sin | 5 | NA |
| 241 | 133.89 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 10 |
| 254 | 133.95 | temperature | 25 | 720 | < th | dose dependent | sin | 14 | NA |
| 277 | 134.03 | temperature | 20 | 720 | < th | dose independent | sin | 15 | NA |
| 314 | 134.14 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 331 | 134.17 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 404 | 134.37 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 10 |
| 472 | 134.55 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 476 | 134.55 | temperature | 30 | 10 | < th | dose dependent | sin | 5 | NA |
| 512 | 134.63 | temperature | 20 | 270 | < th | dose independent | sin | 8 | NA |
| 523 | 134.66 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 23 |
| 555 | 134.76 | temperature | 30 | 90 | < th | dose dependent | sin | 6 | NA |
| 579 | 134.79 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 583 | 134.79 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 23 |
| 658 | 134.95 | temperature | 20 | 270 | < th | dose independent | rect. | 18 | 23 |
| 662 | 134.96 | temperature | 20 | 270 | < th | dose independent | rect. | 18 | 18 |
| 664 | 134.96 | temperature | 20 | 270 | < th | dose independent | rect. | 15 | 21 |
| 672 | 134.97 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 890 | 135.37 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 940 | 135.45 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 14 |