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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0185400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome P450 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.05 (0.0181) R2 : 0.0188
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.113 (0.0381) R2dN8 : 0.0242 R2N8 : 0.0188
σ : 0.341
deviance : 53.38
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
48.85 0.328 2.41 -1.57 0.0697 -74.9 -0.122 -159 -0.126 14.1 14.99 735 -- --
50.51 0.334 3.05 -0.228 0.0806 0.597 -0.219 -- -0.133 13.7 14.99 735 -- --
48.9 0.326 2.41 -1.57 0.0699 -74.9 -- -159 -0.127 14.4 14.99 739 -- --
49.34 0.327 3.05 -0.189 0.0578 0.7 -- -- -0.121 13.3 17.4 406 -- --
49.19 0.327 2.41 -1.58 -- -75.1 -- -160 -0.129 -- 14.99 735 -- --
51.18 0.335 3.06 -0.254 0.0728 -- -0.148 -- -0.139 14.1 -- -- -- --
51.26 0.335 3.06 -0.258 0.0735 -- -- -- -0.14 14.4 -- -- -- --
49.56 0.328 3.05 -0.192 -- 0.704 -- -- -0.118 -- 17.42 427 -- --
50.21 0.33 3.04 -- 0.0679 0.816 -- -- -0.091 14.3 17.44 419 -- --
51.58 0.336 3.06 -0.261 -- -- -- -- -0.142 -- -- -- -- --
53.01 0.341 3.05 -- 0.0784 -- -- -- -0.111 14.5 -- -- -- --
50.42 0.331 3.04 -- -- 0.75 -- -- -0.0892 -- 18.8 444 -- --
53.38 0.341 3.05 -- -- -- -- -- -0.113 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 47.35 humidity 80.0 30 < th dose dependent rect. 18 2
7 47.67 humidity 80.0 30 < th dose dependent rect. 18 14
8 47.73 humidity 90.0 270 > th dose independent rect. 11 5
20 47.94 temperature 15.0 90 > th dose independent rect. 20 22
21 47.94 humidity 90.0 270 > th dose dependent rect. 11 5
26 47.96 humidity 80.0 30 < th dose dependent rect. 18 10
37 48.06 temperature 15.0 90 > th dose independent rect. 8 18
50 48.19 precipitation 0.1 1440 < th dose independent rect. 24 3
52 48.19 wind 1.0 30 < th dose dependent rect. 13 3
54 48.19 precipitation 0.1 1440 < th dose dependent rect. 24 3
89 48.32 precipitation 0.1 1440 < th dose independent rect. 22 5
91 48.32 precipitation 0.1 1440 < th dose dependent rect. 22 5
92 48.33 temperature 15.0 270 > th dose independent rect. 20 15
93 48.33 temperature 15.0 90 > th dose independent rect. 3 23
97 48.37 temperature 15.0 270 > th dose independent rect. 9 14
105 48.49 temperature 15.0 270 > th dose independent rect. 5 20
106 48.50 atmosphere 1005.0 90 < th dose independent rect. 18 1
116 48.55 radiation 20.0 4320 < th dose independent rect. 22 8
118 48.55 wind 7.0 30 < th dose independent rect. 20 22
126 48.59 wind 1.0 30 < th dose independent rect. 13 3
131 48.60 precipitation 0.1 270 > th dose independent rect. 10 6
148 48.64 temperature 15.0 270 > th dose independent rect. 5 10
155 48.65 temperature 15.0 1440 > th dose independent rect. 8 20
156 48.65 humidity 90.0 10 < th dose independent rect. 21 21
180 48.71 wind 7.0 30 < th dose independent rect. 8 10
183 48.71 temperature 30.0 10 < th dose dependent rect. 2 19
190 48.74 temperature 15.0 10 > th dose independent rect. 21 5
196 48.75 temperature 15.0 1440 > th dose independent rect. 6 22
197 48.76 temperature 15.0 1440 > th dose independent rect. 19 9
198 48.76 temperature 15.0 720 < th dose independent rect. 10 16
203 48.76 temperature 15.0 720 < th dose dependent rect. 9 17
207 48.77 temperature 15.0 720 < th dose independent rect. 22 4
210 48.77 humidity 90.0 10 > th dose independent rect. 2 10
213 48.77 temperature 10.0 10 > th dose dependent rect. 20 22
216 48.78 humidity 90.0 10 < th dose independent rect. 8 10
218 48.78 temperature 15.0 720 < th dose dependent rect. 23 3
221 48.78 temperature 15.0 720 < th dose dependent rect. 22 5
223 48.78 wind 1.0 30 < th dose dependent rect. 15 7
224 48.78 temperature 15.0 720 < th dose dependent rect. 21 7
233 48.79 humidity 90.0 270 > th dose independent rect. 14 1
235 48.79 atmosphere 1015.0 1440 < th dose independent rect. 3 1
237 48.79 radiation 1.0 1440 < th dose independent rect. 8 1
246 48.79 humidity 90.0 270 > th dose dependent rect. 14 1
248 48.79 radiation 1.0 1440 < th dose dependent rect. 8 1
258 48.80 temperature 15.0 720 < th dose independent sin 19 NA
259 48.80 humidity 80.0 90 < th dose independent rect. 18 2
268 48.80 temperature 15.0 720 < th dose dependent sin 19 NA
270 48.80 wind 1.0 10 > th dose dependent rect. 3 5
273 48.80 humidity 80.0 1440 > th dose dependent rect. 7 8
281 48.81 precipitation 0.1 270 > th dose independent rect. 14 2
282 48.81 temperature 15.0 1440 > th dose independent rect. 21 7
283 48.81 temperature 15.0 720 < th dose independent rect. 19 8
290 48.81 temperature 15.0 720 < th dose dependent sin 12 NA
291 48.81 temperature 15.0 720 < th dose dependent rect. 24 1
292 48.81 precipitation 0.1 270 > th dose dependent rect. 14 2
295 48.81 temperature 15.0 720 < th dose dependent rect. 18 12
322 48.82 temperature 15.0 720 < th dose independent sin 16 NA
339 48.82 temperature 20.0 720 < th dose dependent rect. 10 8
372 48.83 humidity 90.0 270 < th dose independent rect. 6 9
378 48.83 temperature 15.0 1440 > th dose independent rect. 10 18
385 48.84 temperature 15.0 1440 < th dose independent sin 12 NA
412 48.84 temperature 15.0 1440 < th dose independent rect. 10 19
432 48.84 temperature 15.0 90 > th dose independent rect. 8 23
445 48.84 temperature 15.0 1440 < th dose dependent rect. 24 21
455 48.85 temperature 15.0 1440 < th dose independent no NA NA
456 48.85 precipitation 0.1 1440 < th dose independent rect. 9 2
458 48.85 radiation 1.0 1440 > th dose independent rect. 8 5
467 48.85 temperature 15.0 1440 > th dose independent rect. 16 12
488 48.85 temperature 15.0 1440 < th dose independent rect. 17 22
489 48.85 temperature 15.0 1440 < th dose independent rect. 2 23
498 48.85 temperature 15.0 1440 < th dose dependent sin 8 NA
500 48.85 precipitation 0.1 1440 < th dose dependent rect. 9 2
551 48.86 radiation 1.0 1440 > th dose independent rect. 8 1
574 48.86 temperature 15.0 1440 < th dose independent rect. 18 20
597 48.86 temperature 15.0 720 < th dose dependent no NA NA
629 48.86 temperature 15.0 720 < th dose dependent rect. 17 21
650 48.87 humidity 90.0 90 < th dose independent rect. 2 1
651 48.87 precipitation 0.1 1440 > th dose independent rect. 1 2
688 48.87 precipitation 0.1 1440 > th dose dependent rect. 1 2
784 48.89 temperature 15.0 1440 < th dose independent rect. 24 1
789 48.89 radiation 1.0 1440 > th dose independent rect. 8 7
834 48.90 temperature 15.0 90 > th dose independent rect. 8 10
862 48.91 temperature 15.0 720 > th dose independent sin 16 NA
865 48.91 radiation 20.0 4320 < th dose independent rect. 24 6
876 48.91 humidity 90.0 10 < th dose independent rect. 21 18
904 48.92 radiation 1.0 1440 < th dose independent rect. 8 7
925 48.92 radiation 1.0 1440 < th dose dependent rect. 8 7
972 48.94 temperature 15.0 1440 > th dose independent rect. 5 3
979 48.94 precipitation 0.1 270 > th dose independent rect. 6 11
994 48.94 wind 1.0 90 > th dose dependent rect. 2 1