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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0182600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Protein kinase-like protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.58 (0.261) R2 : 0.517
β1 : 9.94 (2.4) R2dD : 3.5 R2D : -5.77
β2 : 1.48 (0.119) R2dC : 0.173 R2C : -0.677
β3 : -12 (2.59) R2dE : 7.42 R2E : -10.2
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 125 (24.3) R2dD*E : 13.5 R2D*E : -8.61
γ1 : -0.392 (0.104) R2dN8 : 0.0207 R2N8 : -1.01
σ : 0.9
deviance : 373.47
__
_____
C
peak time of C : 1.51
E
wheather : temperature
threshold : 30.12
memory length : 784
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 1.42

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
364.15 0.897 3.6 9.82 1.49 -11.9 1.54 124 -0.389 1.46 30.1 760 18 1.03
434.72 0.979 4.92 -2.16 1.81 0.925 2.1 -- -0.535 2.2 30.1 760 18 1.03
373.47 0.9 3.58 9.94 1.48 -12 -- 125 -0.392 1.51 30.12 784 18 1.42
392.16 0.922 4.88 -2.39 1.57 1.3 -- -- -0.428 1.92 29.36 733 17.9 0.901
500.28 1.04 3.5 10.4 -- -12.1 -- 130 -0.321 -- 30.1 724 17.9 4.32
436.54 0.979 4.92 -2.15 1.8 -- 2.07 -- -0.542 2.14 -- -- -- --
452.71 0.996 4.93 -2.21 1.8 -- -- -- -0.554 2.15 -- -- -- --
451.94 0.99 5.12 -2.43 -- 1.82 -- -- -0.91 -- 16.16 667 18.2 3.33
540.4 1.08 4.85 -- 1.55 1.08 -- -- -0.161 1.97 29.7 775 17.9 2.37
646.35 1.19 4.91 -2.14 -- -- -- -- -0.511 -- -- -- -- --
581.66 1.13 4.88 -- 1.76 -- -- -- -0.308 2.13 -- -- -- --
572.67 1.11 4.87 -- -- 1.9 -- -- -0.331 -- 7.012 770 16.4 5.93
766.76 1.29 4.86 -- -- -- -- -- -0.274 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 364.88 temperature 30.0 720 > th dose dependent rect. 18 1
15 366.11 wind 3.0 90 < th dose dependent rect. 3 2
16 369.47 wind 1.0 90 < th dose independent rect. 4 1
33 373.18 humidity 70.0 720 > th dose independent rect. 19 7
37 375.83 temperature 30.0 720 > th dose independent rect. 18 1
51 376.45 humidity 50.0 1440 < th dose independent rect. 16 1
53 376.93 humidity 50.0 1440 < th dose dependent rect. 16 1
54 377.16 humidity 80.0 720 < th dose dependent rect. 18 3
58 377.75 humidity 70.0 720 < th dose independent rect. 18 2
70 378.03 wind 3.0 10 < th dose dependent rect. 3 3
100 379.40 humidity 70.0 720 > th dose independent rect. 18 14
103 379.71 humidity 90.0 90 > th dose dependent rect. 3 2
125 380.88 temperature 20.0 90 > th dose dependent rect. 4 1
129 381.25 humidity 90.0 90 > th dose independent rect. 3 2
130 381.35 humidity 50.0 1440 > th dose independent rect. 16 1
145 382.80 atmosphere 1005.0 90 > th dose independent rect. 4 1
146 382.81 temperature 25.0 90 < th dose independent rect. 4 1
148 383.10 precipitation 0.1 90 < th dose independent rect. 3 2
149 383.10 precipitation 0.1 90 < th dose dependent rect. 3 2
180 383.29 temperature 20.0 90 > th dose independent rect. 4 1
234 386.66 radiation 1.0 90 < th dose independent rect. 3 2
238 386.69 temperature 10.0 90 > th dose independent rect. 3 2
241 386.69 humidity 50.0 90 > th dose independent rect. 3 2
244 386.69 atmosphere 995.0 90 > th dose independent rect. 3 2
245 386.69 atmosphere 1010.0 90 < th dose independent rect. 3 2
250 386.69 temperature 10.0 90 > th dose independent rect. 5 22
251 386.70 radiation 20.0 90 < th dose dependent rect. 3 2
271 387.08 wind 9.0 90 < th dose independent rect. 5 22
272 387.11 humidity 60.0 720 > th dose dependent rect. 18 6
277 387.30 atmosphere 1005.0 10 > th dose independent rect. 4 2
311 387.76 humidity 60.0 720 > th dose dependent rect. 19 4
312 387.86 temperature 25.0 720 > th dose dependent rect. 21 2
317 388.15 atmosphere 1015.0 90 < th dose dependent rect. 3 2
330 388.87 temperature 20.0 10 > th dose dependent rect. 4 2
332 389.03 precipitation 0.1 90 < th dose independent rect. 5 22
334 389.03 precipitation 0.1 90 < th dose dependent rect. 5 22
390 390.26 humidity 60.0 1440 > th dose independent rect. 17 11
427 390.51 humidity 80.0 720 > th dose independent rect. 20 2
430 390.51 atmosphere 995.0 90 > th dose dependent rect. 4 1
480 391.22 temperature 30.0 1440 < th dose independent rect. 18 9
529 391.65 temperature 30.0 1440 < th dose independent rect. 18 2
532 391.67 radiation 1.0 90 < th dose dependent rect. 3 16
536 391.71 temperature 20.0 10 > th dose independent rect. 4 2
573 392.17 wind 1.0 30 < th dose independent rect. 24 6
594 392.38 humidity 90.0 10 > th dose independent rect. 4 2
597 392.43 radiation 20.0 14400 < th dose independent rect. 3 3
606 392.67 wind 7.0 1440 < th dose independent rect. 3 3
633 392.92 precipitation 0.1 10 < th dose independent rect. 3 3
634 392.92 precipitation 0.1 10 < th dose dependent rect. 3 3
654 393.08 humidity 70.0 10 > th dose dependent rect. 4 2
707 393.69 radiation 1.0 90 < th dose dependent rect. 3 14
711 393.75 radiation 1.0 90 < th dose dependent rect. 3 4
753 394.06 temperature 10.0 1440 > th dose independent rect. 3 3
756 394.06 temperature 30.0 1440 < th dose independent rect. 3 3
760 394.06 humidity 50.0 1440 > th dose independent rect. 3 3
769 394.06 atmosphere 995.0 1440 > th dose independent rect. 3 3
770 394.06 radiation 20.0 1440 < th dose independent rect. 3 3
779 394.06 temperature 10.0 1440 > th dose independent rect. 6 21
790 394.11 atmosphere 1015.0 1440 < th dose independent rect. 3 3
818 394.25 radiation 1.0 90 < th dose independent rect. 3 4
873 394.73 wind 7.0 10 < th dose independent rect. 6 22
898 394.83 temperature 15.0 10 > th dose independent rect. 6 22
921 394.90 radiation 10.0 10 < th dose independent rect. 4 2
979 395.16 radiation 40.0 10 < th dose dependent rect. 4 2
985 395.24 temperature 10.0 10 > th dose independent rect. 4 2
987 395.24 temperature 30.0 10 < th dose independent rect. 4 2
988 395.24 humidity 50.0 10 > th dose independent rect. 4 2
991 395.24 atmosphere 995.0 10 > th dose independent rect. 4 2
992 395.24 atmosphere 1010.0 10 < th dose independent rect. 4 2