Os02g0181300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WRKY transcription factor 71 (Transcription factor WRKY09).
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Os02g0181300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WRKY transcription factor 71 (Transcription factor WRKY09).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 188.9 | 0.646 | 10.8 | 1.12 | 1.22 | 1.1 | -0.436 | -2.47 | 0.773 | 22.9 | 15.1 | 906 | -- | -- |
| 198.16 | 0.656 | 10.8 | 1.04 | 1.25 | 1.15 | 0.313 | -- | 0.739 | 22.8 | 13.24 | 924 | -- | -- |
| 189.51 | 0.641 | 10.8 | 1.12 | 1.22 | 1.1 | -- | -2.18 | 0.767 | 22.9 | 15.35 | 910 | -- | -- |
| 198.49 | 0.656 | 10.8 | 1.02 | 1.25 | 1.11 | -- | -- | 0.745 | 22.8 | 14.42 | 921 | -- | -- |
| 227.6 | 0.706 | 10.9 | 0.9 | -- | 0.672 | -- | -0.13 | 0.534 | -- | 10.03 | 1700 | -- | -- |
| 218.92 | 0.694 | 10.9 | 0.815 | 0.928 | -- | -0.276 | -- | 0.535 | 1.17 | -- | -- | -- | -- |
| 219.22 | 0.693 | 10.9 | 0.825 | 0.928 | -- | -- | -- | 0.537 | 1.1 | -- | -- | -- | -- |
| 218.69 | 0.689 | 10.7 | 1.16 | -- | 0.989 | -- | -- | 0.805 | -- | 10.89 | 194 | -- | -- |
| 217.24 | 0.686 | 10.9 | -- | 1.34 | 1.29 | -- | -- | 0.627 | 23.1 | 9.719 | 995 | -- | -- |
| 272.66 | 0.772 | 10.9 | 0.86 | -- | -- | -- | -- | 0.555 | -- | -- | -- | -- | -- |
| 237.14 | 0.72 | 10.9 | -- | 0.942 | -- | -- | -- | 0.445 | 1.13 | -- | -- | -- | -- |
| 224.57 | 0.698 | 10.9 | -- | -- | 0.886 | -- | -- | 0.469 | -- | 7.4 | 197 | -- | -- |
| 292.17 | 0.798 | 10.9 | -- | -- | -- | -- | -- | 0.46 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 186.33 | radiation | 10.0 | 720 | < th | dose independent | rect. | 12 | 9 |
| 10 | 188.63 | radiation | 10.0 | 720 | < th | dose independent | rect. | 13 | 15 |
| 15 | 189.02 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 11 | 10 |
| 18 | 189.42 | radiation | 10.0 | 720 | < th | dose independent | rect. | 14 | 4 |
| 23 | 189.55 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 9 | 12 |
| 33 | 190.33 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 9 | 19 |
| 40 | 190.64 | radiation | 10.0 | 720 | < th | dose independent | sin | 20 | NA |
| 42 | 190.68 | radiation | 10.0 | 720 | < th | dose dependent | sin | 21 | NA |
| 48 | 190.94 | radiation | 10.0 | 720 | < th | dose independent | sin | 16 | NA |
| 54 | 191.10 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 11 | 17 |
| 79 | 191.72 | radiation | 10.0 | 720 | < th | dose independent | rect. | 14 | 1 |
| 93 | 191.95 | temperature | 25.0 | 90 | < th | dose independent | rect. | 15 | 6 |
| 111 | 192.27 | temperature | 25.0 | 90 | < th | dose independent | rect. | 17 | 4 |
| 112 | 192.33 | temperature | 25.0 | 90 | < th | dose independent | rect. | 13 | 8 |
| 119 | 192.55 | radiation | 10.0 | 720 | > th | dose independent | rect. | 11 | 7 |
| 146 | 192.85 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 11 | 20 |
| 190 | 193.62 | radiation | 10.0 | 720 | > th | dose independent | sin | 19 | NA |
| 204 | 193.75 | temperature | 25.0 | 270 | < th | dose independent | rect. | 17 | 1 |
| 209 | 193.80 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 8 |
| 216 | 193.87 | radiation | 10.0 | 720 | < th | dose dependent | sin | 17 | NA |
| 286 | 194.26 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 330 | 194.76 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 6 |
| 382 | 195.27 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 17 | 1 |
| 499 | 195.97 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 598 | 196.47 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 23 | 23 |
| 646 | 196.67 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 664 | 196.75 | radiation | 1.0 | 720 | > th | dose dependent | sin | 15 | NA |
| 719 | 196.93 | radiation | 20.0 | 720 | < th | dose independent | rect. | 5 | 23 |
| 745 | 197.04 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 765 | 197.10 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 16 | 1 |
| 800 | 197.20 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 802 | 197.22 | radiation | 20.0 | 720 | < th | dose independent | rect. | 24 | 23 |
| 813 | 197.27 | radiation | 20.0 | 720 | < th | dose dependent | no | NA | NA |
| 836 | 197.32 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 837 | 197.32 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 838 | 197.33 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 847 | 197.37 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 12 | 6 |
| 875 | 197.40 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 24 | 18 |
| 886 | 197.44 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 14 | 1 |
| 925 | 197.56 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 968 | 197.66 | radiation | 20.0 | 720 | < th | dose independent | no | NA | NA |
| 978 | 197.69 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 3 | 16 |
| 994 | 197.74 | precipitation | 0.1 | 90 | < th | dose independent | sin | 1 | NA |
| 995 | 197.74 | precipitation | 0.1 | 90 | < th | dose dependent | sin | 1 | NA |