Os02g0180200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein 103 family protein.
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Os02g0180200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein 103 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.94 | 0.286 | 13.5 | -0.274 | 1.05 | 0.631 | 0.689 | 2.8 | -0.312 | 20.7 | 42.32 | 247 | -- | -- |
| 42.03 | 0.302 | 13.5 | -0.307 | 1.04 | 0.453 | 0.421 | -- | -0.314 | 20.6 | 39.89 | 308 | -- | -- |
| 38.34 | 0.288 | 13.5 | -0.28 | 1.04 | 0.656 | -- | 2.63 | -0.312 | 20.6 | 42.19 | 269 | -- | -- |
| 42.56 | 0.304 | 13.5 | -0.308 | 1.04 | 0.469 | -- | -- | -0.31 | 20.7 | 36.82 | 304 | -- | -- |
| 69.76 | 0.389 | 13.5 | -0.272 | -- | 1.14 | -- | 0.868 | -0.517 | -- | -0.0005589 | 818 | -- | -- |
| 44.01 | 0.311 | 13.5 | -0.308 | 1.06 | -- | 0.508 | -- | -0.285 | 20.2 | -- | -- | -- | -- |
| 44.79 | 0.313 | 13.5 | -0.322 | 1.06 | -- | -- | -- | -0.285 | 20.2 | -- | -- | -- | -- |
| 67.19 | 0.382 | 13.5 | -0.397 | -- | 1.04 | -- | -- | -0.413 | -- | -7.214e-06 | 878 | -- | -- |
| 45.11 | 0.313 | 13.5 | -- | 1.05 | 0.467 | -- | -- | -0.273 | 20.6 | 36.19 | 275 | -- | -- |
| 106.52 | 0.482 | 13.4 | -0.331 | -- | -- | -- | -- | -0.297 | -- | -- | -- | -- | -- |
| 47.54 | 0.323 | 13.5 | -- | 1.06 | -- | -- | -- | -0.249 | 20.1 | -- | -- | -- | -- |
| 71.53 | 0.394 | 13.5 | -- | -- | 1.02 | -- | -- | -0.368 | -- | -9.748 | 874 | -- | -- |
| 109.41 | 0.488 | 13.4 | -- | -- | -- | -- | -- | -0.261 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.19 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 6 |
| 3 | 32.27 | temperature | 25 | 270 | > th | dose dependent | rect. | 20 | 18 |
| 6 | 32.40 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 13 |
| 7 | 32.41 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 18 | 32.90 | temperature | 25 | 270 | > th | dose dependent | sin | 6 | NA |
| 61 | 33.67 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 73 | 34.04 | temperature | 25 | 90 | > th | dose dependent | sin | 2 | NA |
| 82 | 34.21 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 7 |
| 194 | 35.18 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 21 |
| 223 | 35.37 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 19 |
| 226 | 35.39 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 237 | 35.42 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 15 |
| 281 | 35.62 | temperature | 30 | 270 | < th | dose dependent | sin | 2 | NA |
| 296 | 35.68 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 317 | 35.74 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 352 | 35.86 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 13 |
| 381 | 35.94 | temperature | 25 | 270 | > th | dose independent | sin | 1 | NA |
| 397 | 35.97 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 16 |
| 475 | 36.12 | radiation | 40 | 270 | > th | dose dependent | rect. | 14 | 21 |
| 509 | 36.18 | temperature | 25 | 270 | < th | dose independent | sin | 1 | NA |
| 528 | 36.21 | radiation | 40 | 270 | > th | dose dependent | sin | 9 | NA |
| 570 | 36.36 | radiation | 40 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 618 | 36.45 | temperature | 30 | 270 | < th | dose independent | sin | 7 | NA |
| 670 | 36.53 | temperature | 30 | 90 | < th | dose independent | sin | 4 | NA |
| 782 | 36.73 | temperature | 30 | 270 | > th | dose independent | sin | 7 | NA |
| 789 | 36.73 | radiation | 40 | 270 | > th | dose dependent | rect. | 14 | 23 |