Os02g0179100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Metal-dependent phosphohydrolase, HD region domain containing protein.
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Os02g0179100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Metal-dependent phosphohydrolase, HD region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.18 | 0.258 | 13.6 | -0.149 | 0.588 | -0.564 | -0.0608 | 0.441 | -0.26 | 21 | 20.5 | 511 | -- | -- |
| 30.83 | 0.259 | 13.6 | -0.175 | 0.594 | -0.608 | 0.0516 | -- | -0.261 | 21 | 20.5 | 492 | -- | -- |
| 30.19 | 0.256 | 13.6 | -0.152 | 0.587 | -0.566 | -- | 0.422 | -0.261 | 21 | 20.51 | 500 | -- | -- |
| 30.75 | 0.258 | 13.6 | -0.227 | 0.589 | -0.603 | -- | -- | -0.275 | 20.9 | 20.6 | 473 | -- | -- |
| 46.42 | 0.319 | 13.6 | -0.277 | -- | -0.484 | -- | 0.202 | -0.31 | -- | 20.51 | 500 | -- | -- |
| 42.19 | 0.304 | 13.6 | -0.437 | 0.521 | -- | 0.0424 | -- | -0.409 | 21.3 | -- | -- | -- | -- |
| 42.19 | 0.304 | 13.6 | -0.438 | 0.521 | -- | -- | -- | -0.409 | 21.2 | -- | -- | -- | -- |
| 46.42 | 0.317 | 13.6 | -0.238 | -- | -0.536 | -- | -- | -0.313 | -- | 20.58 | 118 | -- | -- |
| 32 | 0.263 | 13.6 | -- | 0.613 | -0.672 | -- | -- | -0.251 | 20.9 | 20.4 | 512 | -- | -- |
| 57.98 | 0.356 | 13.6 | -0.436 | -- | -- | -- | -- | -0.412 | -- | -- | -- | -- | -- |
| 47.26 | 0.322 | 13.6 | -- | 0.521 | -- | -- | -- | -0.361 | 21.2 | -- | -- | -- | -- |
| 48.55 | 0.325 | 13.6 | -- | -- | -0.56 | -- | -- | -0.274 | -- | 20.6 | 90 | -- | -- |
| 63 | 0.37 | 13.6 | -- | -- | -- | -- | -- | -0.363 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.65 | temperature | 20 | 270 | > th | dose independent | rect. | 10 | 22 |
| 4 | 30.85 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 23 |
| 5 | 30.87 | temperature | 20 | 720 | > th | dose independent | sin | 13 | NA |
| 8 | 30.92 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 14 |
| 12 | 30.99 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 16 |
| 21 | 31.07 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 10 |
| 22 | 31.07 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 20 |
| 25 | 31.11 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 18 |
| 26 | 31.11 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 22 |
| 34 | 31.18 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 10 |
| 75 | 31.30 | temperature | 20 | 270 | > th | dose independent | sin | 8 | NA |
| 87 | 31.34 | temperature | 20 | 720 | < th | dose independent | rect. | 16 | 21 |
| 88 | 31.34 | temperature | 20 | 720 | < th | dose independent | rect. | 18 | 21 |
| 89 | 31.34 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 23 |
| 92 | 31.35 | temperature | 20 | 720 | < th | dose independent | rect. | 16 | 19 |
| 104 | 31.38 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 117 | 31.39 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 123 | 31.40 | temperature | 20 | 720 | < th | dose independent | rect. | 9 | 22 |
| 157 | 31.47 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |
| 179 | 31.52 | temperature | 20 | 720 | < th | dose independent | sin | 12 | NA |
| 180 | 31.52 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 195 | 31.55 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 23 |
| 205 | 31.57 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 15 |
| 214 | 31.60 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 23 |
| 219 | 31.61 | humidity | 80 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 233 | 31.66 | temperature | 25 | 720 | < th | dose dependent | sin | 11 | NA |
| 257 | 31.71 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 23 |
| 366 | 31.99 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 418 | 32.10 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 14 |
| 447 | 32.15 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 12 |
| 456 | 32.16 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 22 |
| 476 | 32.20 | temperature | 20 | 270 | < th | dose independent | sin | 7 | NA |
| 489 | 32.21 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 17 |
| 541 | 32.29 | wind | 3 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 552 | 32.31 | temperature | 15 | 720 | > th | dose dependent | sin | 11 | NA |
| 553 | 32.31 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 608 | 32.41 | humidity | 90 | 14400 | > th | dose dependent | sin | 3 | NA |
| 609 | 32.41 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 11 |
| 621 | 32.44 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 626 | 32.45 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 670 | 32.51 | humidity | 90 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 683 | 32.53 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 693 | 32.54 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 707 | 32.56 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 23 |
| 749 | 32.62 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 750 | 32.62 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 755 | 32.62 | humidity | 90 | 14400 | > th | dose dependent | rect. | 11 | 23 |
| 756 | 32.63 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 763 | 32.63 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 774 | 32.65 | wind | 9 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 787 | 32.65 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 23 |
| 823 | 32.69 | temperature | 20 | 4320 | > th | dose independent | rect. | 15 | 8 |
| 824 | 32.69 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 10 |
| 831 | 32.69 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 885 | 32.74 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 910 | 32.76 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 3 |
| 950 | 32.79 | wind | 1 | 43200 | < th | dose independent | rect. | 14 | 1 |