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Os02g0178600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to E3 ubiquitin ligase EL5 (EC 6.3.2.-).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.78 (0.0298) R2 : 0.834
β1 : -0.539 (0.11) R2dD : 0.00941 R2D : 0.00363
β2 : 2.43 (0.0704) R2dC : 0.434 R2C : 0.427
β3 : -2.3 (0.0838) R2dE : 0.284 R2E : 0.231
β4 : -3.47 (0.268) R2dD*C : 0.0639 R2D*C : 0.0459
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.747 (0.0641) R2dN8 : 0.0695 R2N8 : 0.027
σ : 0.556
deviance : 142.32
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_____
C
peak time of C : 12
E
wheather : temperature
threshold : 6.325
memory length : 285
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 0.949
open length of G : 5.94

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
138.37 0.553 7.78 -0.678 2.43 -2.19 -3.51 -1.8 0.733 12.2 8.86 280 1.02 5.93
142.32 0.556 7.78 -0.539 2.43 -2.3 -3.47 -- 0.747 12 6.325 285 0.949 5.94
182.36 0.629 7.84 -0.794 2.81 -2.24 -- -2.59 0.656 12 9.438 280 0.999 7.62
194.06 0.649 7.79 -0.681 2.43 -2.16 -- -- 0.727 12.6 10.91 301 0.966 5.5
525.67 1.07 7.84 -0.79 -- -2.38 -- -0.689 0.663 -- 9.438 280 0.999 7.62
229.99 0.711 7.85 -0.717 3.06 -- -2.56 -- 0.56 14.3 -- -- -- --
253.14 0.745 7.86 -0.787 3.07 -- -- -- 0.547 14.5 -- -- -- --
481.36 1.02 7.84 -0.72 -- -2.25 -- -- 0.726 -- 1.018 137 0.0133 6.55
205.83 0.668 7.77 -- 2.44 -2.25 -- -- 0.807 12.6 11.81 304 0.917 5.45
807.79 1.33 7.88 -0.917 -- -- -- -- 0.471 -- -- -- -- --
269.45 0.768 7.84 -- 3.08 -- -- -- 0.634 14.5 -- -- -- --
493.56 1.03 7.81 -- -- -2.33 -- -- 0.743 -- -2.674 143 0.0167 6.34
829.96 1.34 7.86 -- -- -- -- -- 0.572 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 138.94 temperature 10.0 270 > th dose dependent rect. 1 6
2 141.13 precipitation 0.1 270 < th dose independent rect. 1 6
3 141.13 precipitation 0.1 270 < th dose dependent rect. 1 6
5 142.01 radiation 30.0 270 < th dose independent rect. 15 15
6 142.06 precipitation 0.1 270 < th dose independent rect. 15 15
7 142.06 precipitation 0.1 270 < th dose dependent rect. 15 15
8 142.26 radiation 40.0 270 < th dose dependent rect. 15 15
9 142.55 radiation 10.0 270 < th dose independent rect. 1 6
13 142.80 temperature 10.0 270 > th dose dependent rect. 2 4
15 143.16 wind 9.0 270 < th dose dependent rect. 1 6
17 143.36 humidity 70.0 270 > th dose independent rect. 1 6
18 143.57 temperature 10.0 270 > th dose independent rect. 6 9
19 143.57 atmosphere 1015.0 270 < th dose independent rect. 6 9
20 143.57 temperature 10.0 270 > th dose independent rect. 15 15
21 143.57 wind 9.0 270 < th dose independent rect. 7 18
22 143.64 wind 7.0 270 < th dose independent rect. 1 6
23 143.69 precipitation 0.1 270 < th dose independent rect. 6 9
24 143.69 precipitation 0.1 270 < th dose dependent rect. 6 9
26 143.79 atmosphere 995.0 270 > th dose independent rect. 6 9
28 143.82 temperature 10.0 270 > th dose independent rect. 1 6
30 143.82 temperature 30.0 270 < th dose independent rect. 1 6
31 143.82 humidity 50.0 270 > th dose independent rect. 1 6
33 143.82 atmosphere 995.0 270 > th dose independent rect. 1 6
34 143.82 atmosphere 1015.0 270 < th dose independent rect. 1 6
36 143.82 temperature 10.0 270 > th dose independent rect. 7 18
37 143.92 radiation 40.0 270 < th dose dependent rect. 1 6
39 144.24 wind 9.0 270 < th dose independent rect. 6 9
41 144.28 wind 9.0 270 < th dose independent rect. 15 15
50 144.96 wind 7.0 90 < th dose dependent rect. 3 6
60 145.17 radiation 40.0 270 < th dose dependent rect. 1 8
81 146.70 humidity 50.0 270 > th dose dependent rect. 1 6
83 146.84 precipitation 0.1 270 < th dose independent rect. 7 18
84 146.84 precipitation 0.1 270 < th dose dependent rect. 7 18
88 146.99 temperature 10.0 270 > th dose dependent rect. 3 2
94 147.22 precipitation 0.1 90 < th dose independent rect. 3 6
95 147.22 precipitation 0.1 90 < th dose dependent rect. 3 6
109 147.37 precipitation 0.1 270 < th dose independent rect. 3 2
110 147.37 precipitation 0.1 270 < th dose dependent rect. 3 2
112 147.55 radiation 20.0 90 < th dose independent rect. 3 6
114 147.62 radiation 40.0 90 < th dose dependent rect. 3 6
124 148.25 radiation 40.0 90 < th dose dependent rect. 3 8
130 148.37 humidity 50.0 90 > th dose dependent rect. 3 6
136 148.59 atmosphere 995.0 270 > th dose independent rect. 7 18
154 148.91 wind 9.0 270 < th dose dependent rect. 3 2
171 149.02 atmosphere 1010.0 90 < th dose independent rect. 3 6
173 149.09 radiation 40.0 90 < th dose independent rect. 3 6
179 149.25 humidity 60.0 90 > th dose independent rect. 3 6
180 149.26 humidity 50.0 90 > th dose dependent rect. 3 8
181 149.32 wind 7.0 90 < th dose independent rect. 3 6
186 149.46 temperature 10.0 90 > th dose independent rect. 3 6
189 149.46 atmosphere 995.0 90 > th dose independent rect. 3 6
195 149.54 humidity 50.0 270 > th dose independent rect. 6 9
238 150.68 temperature 30.0 90 < th dose independent rect. 3 6
243 150.74 atmosphere 995.0 270 > th dose independent rect. 15 15
251 150.95 wind 9.0 270 < th dose independent rect. 5 22
258 151.18 radiation 1.0 270 < th dose independent rect. 3 2
264 151.22 radiation 10.0 270 < th dose dependent rect. 3 2
271 151.30 radiation 40.0 90 < th dose independent rect. 3 8
276 151.34 wind 9.0 270 < th dose independent rect. 3 2
277 151.34 temperature 10.0 270 > th dose independent rect. 3 2
279 151.34 temperature 30.0 270 < th dose independent rect. 3 2
280 151.34 humidity 50.0 270 > th dose independent rect. 3 2
283 151.34 atmosphere 995.0 270 > th dose independent rect. 3 2
284 151.34 atmosphere 1010.0 270 < th dose independent rect. 3 2
289 151.34 temperature 10.0 270 > th dose independent rect. 5 22
328 152.06 humidity 50.0 270 > th dose dependent rect. 3 2
369 152.54 radiation 10.0 270 < th dose dependent rect. 1 11
387 152.77 wind 1.0 270 > th dose independent rect. 6 9
422 153.18 humidity 50.0 270 > th dose independent rect. 15 15
428 153.23 wind 9.0 90 < th dose dependent rect. 3 8
476 154.09 radiation 40.0 1440 < th dose dependent rect. 18 10
565 155.46 wind 1.0 270 > th dose independent rect. 7 18
579 155.60 atmosphere 1015.0 270 < th dose independent rect. 7 18
607 156.33 radiation 1.0 270 > th dose independent rect. 6 9
639 156.81 wind 9.0 270 < th dose dependent rect. 7 18
663 156.96 temperature 10.0 720 > th dose dependent rect. 18 12
666 157.00 atmosphere 1015.0 270 < th dose dependent rect. 1 6
678 157.19 temperature 30.0 720 < th dose dependent rect. 21 11
692 157.47 atmosphere 1015.0 270 < th dose dependent rect. 3 2
738 158.17 humidity 60.0 90 > th dose independent rect. 3 8
743 158.19 wind 9.0 90 < th dose dependent rect. 9 18
753 158.33 humidity 50.0 10 > th dose dependent rect. 4 7
774 158.60 radiation 40.0 10 < th dose dependent rect. 4 7
776 158.63 humidity 50.0 270 > th dose independent rect. 1 18
777 158.64 humidity 50.0 90 > th dose dependent rect. 21 6
778 158.66 atmosphere 1015.0 90 < th dose dependent rect. 3 4
792 158.82 atmosphere 1015.0 90 < th dose dependent rect. 3 6
796 158.85 precipitation 0.1 10 < th dose independent rect. 3 6
799 158.85 precipitation 0.1 10 < th dose dependent rect. 3 6
842 159.05 precipitation 0.1 90 < th dose independent rect. 3 8
844 159.05 precipitation 0.1 90 < th dose dependent rect. 3 8
850 159.10 precipitation 0.1 90 < th dose independent rect. 3 18
854 159.10 precipitation 0.1 90 < th dose dependent rect. 3 18
865 159.23 humidity 50.0 90 > th dose dependent rect. 3 10
885 159.31 wind 1.0 270 > th dose independent rect. 1 6
896 159.46 wind 9.0 90 < th dose dependent rect. 11 16
901 159.54 atmosphere 1010.0 90 < th dose independent rect. 3 8
919 159.74 radiation 40.0 90 < th dose dependent rect. 3 10
925 159.79 temperature 10.0 10 > th dose dependent rect. 4 4
929 159.85 temperature 10.0 10 > th dose dependent rect. 3 6
940 159.97 radiation 30.0 10 < th dose independent rect. 4 5
953 160.13 radiation 1.0 270 < th dose independent rect. 1 16
954 160.14 radiation 1.0 270 > th dose independent sin 2 NA
962 160.23 wind 1.0 270 > th dose independent rect. 3 1