FiT-DB / Search/ Help/ Sample detail

Os02g0178000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to SNF1 related protein kinase-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11 (0.0217) R2 : 0.759
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.925 (0.0615) R2dC : 0.152 R2C : 0.369
β3 : -1.1 (0.0456) R2dE : 0.391 R2E : 0.607
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0755 (0.0456) R2dN8 : 0.00149 R2N8 : -0.00269
σ : 0.406
deviance : 76.03
__
_____
C
peak time of C : 8.31
E
wheather : radiation
threshold : 0.54
memory length : 97
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
68.61 0.389 11 -0.507 0.875 -1.19 0.618 0.562 -0.122 7.92 0.65 96 -- --
69.59 0.389 11 -0.502 0.877 -1.23 0.287 -- -0.125 7.63 0.55 97 -- --
69.15 0.387 11 -0.49 0.896 -1.16 -- 0.336 -0.114 7.97 0.543 97 -- --
69.74 0.389 11 -0.487 0.896 -1.18 -- -- -0.118 7.93 0.5455 97 -- --
102 0.473 11 -0.511 -- -1.36 -- 0.467 -0.0545 -- 0.79 90 -- --
89.51 0.444 10.9 -0.41 1.88 -- -0.224 -- -0.0217 10.8 -- -- -- --
89.72 0.444 10.9 -0.419 1.89 -- -- -- -0.0224 10.8 -- -- -- --
103.43 0.476 11 -0.505 -- -1.35 -- -- -0.0518 -- 0.79 90 -- --
76.03 0.406 11 -- 0.925 -1.1 -- -- -0.0755 8.31 0.54 97 -- --
310.05 0.823 11 -0.458 -- -- -- -- -0.0343 -- -- -- -- --
94.35 0.454 10.9 -- 1.89 -- -- -- 0.0242 10.8 -- -- -- --
103.91 0.475 11 -- -- -1.41 -- -- -0.0495 -- 0.79 60 -- --
315.58 0.829 11 -- -- -- -- -- 0.0165 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 67.90 radiation 1.0 90 < th dose dependent rect. 15 19
6 67.99 radiation 1.0 90 < th dose dependent rect. 17 17
7 68.00 radiation 1.0 90 < th dose dependent rect. 17 15
35 68.52 radiation 1.0 90 < th dose independent rect. 17 14
36 68.58 radiation 1.0 90 < th dose independent rect. 17 17
51 68.78 radiation 1.0 90 < th dose dependent no NA NA
54 68.78 radiation 1.0 90 < th dose dependent rect. 9 23
56 68.80 radiation 1.0 90 < th dose independent rect. 15 16
57 68.80 radiation 1.0 90 < th dose independent rect. 15 19
73 68.93 radiation 1.0 90 < th dose independent rect. 17 23
105 69.55 radiation 1.0 90 < th dose independent no NA NA
107 69.55 radiation 1.0 90 < th dose independent rect. 9 23
108 69.56 radiation 1.0 90 > th dose independent no NA NA
109 69.56 radiation 1.0 90 > th dose independent rect. 4 15
165 69.71 precipitation 0.1 720 < th dose independent rect. 11 22
166 69.71 precipitation 0.1 720 < th dose dependent rect. 11 22
187 70.03 precipitation 0.1 720 < th dose independent rect. 5 18
188 70.03 precipitation 0.1 720 < th dose dependent rect. 5 18
192 70.39 radiation 1.0 90 > th dose independent rect. 11 23
193 70.43 precipitation 0.1 720 < th dose independent rect. 13 19
194 70.43 precipitation 0.1 720 < th dose dependent rect. 13 19
210 70.69 precipitation 0.1 720 < th dose independent rect. 19 14
212 70.69 precipitation 0.1 720 < th dose dependent rect. 19 14
219 70.99 precipitation 0.1 720 < th dose independent rect. 13 10
220 70.99 precipitation 0.1 720 < th dose dependent rect. 13 10
233 71.13 humidity 50.0 720 > th dose dependent rect. 17 11
234 71.15 precipitation 0.1 720 < th dose independent rect. 11 14
235 71.15 precipitation 0.1 720 < th dose dependent rect. 11 14
243 71.51 precipitation 0.1 720 < th dose independent rect. 19 22
244 71.51 precipitation 0.1 720 < th dose dependent rect. 19 22
245 71.56 radiation 1.0 90 < th dose independent sin 13 NA
247 71.76 radiation 1.0 90 < th dose independent rect. 5 23
249 71.86 radiation 1.0 90 > th dose independent sin 13 NA
255 72.23 humidity 50.0 720 > th dose dependent rect. 18 1
260 72.38 radiation 10.0 720 < th dose dependent rect. 16 3
268 72.48 radiation 10.0 720 < th dose dependent rect. 15 5
269 72.49 radiation 1.0 720 > th dose independent rect. 12 19
276 72.59 humidity 50.0 90 > th dose dependent rect. 18 11
283 72.83 humidity 50.0 720 > th dose dependent rect. 17 3
293 72.96 radiation 1.0 90 < th dose dependent sin 13 NA
296 73.05 radiation 1.0 90 > th dose independent rect. 13 23
306 73.20 radiation 10.0 720 < th dose dependent rect. 15 13
326 73.42 humidity 90.0 720 > th dose dependent rect. 19 2
331 73.48 radiation 1.0 90 > th dose independent rect. 14 19
332 73.50 humidity 90.0 720 < th dose independent rect. 20 4
335 73.51 temperature 20.0 90 > th dose independent rect. 18 11
349 73.59 radiation 1.0 90 < th dose dependent rect. 23 23
364 73.76 temperature 30.0 90 < th dose independent rect. 18 11
369 73.82 radiation 40.0 720 < th dose dependent rect. 15 6
370 73.82 radiation 10.0 720 < th dose dependent rect. 17 10
401 73.98 radiation 1.0 720 < th dose independent rect. 24 19
403 73.99 radiation 1.0 720 < th dose independent rect. 23 21
417 74.05 humidity 60.0 90 > th dose independent rect. 18 11
427 74.10 precipitation 0.1 270 > th dose independent rect. 19 9
428 74.12 radiation 40.0 720 < th dose dependent rect. 15 14
434 74.14 radiation 1.0 720 < th dose dependent rect. 24 19
438 74.17 precipitation 0.1 720 < th dose independent rect. 3 22
441 74.17 precipitation 0.1 720 < th dose dependent rect. 3 22
442 74.18 radiation 1.0 720 < th dose dependent rect. 23 21
446 74.20 radiation 1.0 90 < th dose dependent rect. 1 23
458 74.25 radiation 1.0 720 < th dose independent rect. 17 2
459 74.27 radiation 1.0 90 < th dose independent rect. 23 23
488 74.47 humidity 90.0 30 < th dose independent rect. 14 19
558 74.50 atmosphere 1000.0 90 > th dose independent rect. 18 11
586 74.61 radiation 1.0 720 < th dose independent rect. 16 4
593 74.71 radiation 1.0 90 < th dose independent rect. 1 23
626 74.84 precipitation 0.1 720 < th dose independent rect. 3 14
629 74.84 precipitation 0.1 720 < th dose dependent rect. 3 14
650 74.93 wind 7.0 720 < th dose independent rect. 21 10
653 74.95 humidity 60.0 10 > th dose dependent rect. 18 12
654 74.95 radiation 1.0 90 < th dose dependent rect. 3 23
664 75.01 radiation 1.0 90 > th dose independent rect. 9 23
672 75.04 precipitation 0.1 720 < th dose independent rect. 19 6
674 75.04 precipitation 0.1 720 < th dose dependent rect. 19 6
686 75.13 radiation 1.0 720 < th dose independent rect. 16 12
698 75.20 precipitation 0.1 90 < th dose independent rect. 5 13
699 75.20 precipitation 0.1 90 < th dose dependent rect. 5 13
708 75.23 precipitation 0.1 720 < th dose independent rect. 11 6
709 75.23 humidity 50.0 270 > th dose independent rect. 16 11
712 75.23 precipitation 0.1 720 < th dose dependent rect. 11 6
776 75.56 precipitation 0.1 720 < th dose independent rect. 21 10
777 75.56 wind 7.0 720 < th dose independent rect. 19 14
778 75.56 precipitation 0.1 720 < th dose dependent rect. 21 10
788 75.62 radiation 1.0 90 < th dose independent rect. 3 23
875 76.03 wind 9.0 90 < th dose independent rect. 5 13
877 76.04 temperature 10.0 90 > th dose independent rect. 18 11
882 76.04 temperature 10.0 90 > th dose independent rect. 5 13
883 76.04 atmosphere 1015.0 90 < th dose independent rect. 5 13
885 76.04 humidity 90.0 720 > th dose dependent rect. 17 8
911 76.18 wind 7.0 720 < th dose independent rect. 21 2
918 76.21 wind 9.0 90 < th dose independent rect. 18 11
920 76.22 wind 7.0 720 < th dose independent rect. 20 5
921 76.22 humidity 50.0 720 > th dose independent rect. 17 18
946 76.24 humidity 50.0 720 > th dose dependent rect. 9 19
952 76.27 radiation 30.0 720 < th dose independent rect. 15 14
984 76.37 radiation 1.0 1440 < th dose dependent rect. 9 8
992 76.39 radiation 1.0 1440 < th dose dependent rect. 12 5