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Os02g0176300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.31 (0.0496) R2 : 0.478
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.04 (0.154) R2dC : 0.637 R2C : 0.222
β3 : 2.39 (0.202) R2dE : 0.25 R2E : -0.162
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0663 (0.109) R2dN8 : 0.000688 R2N8 : 0.00502
σ : 0.923
deviance : 392.7
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C
peak time of C : 17.5
E
wheather : temperature
threshold : 26.21
memory length : 840
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 10
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
367.66 0.901 6.24 0.556 2.85 2.4 1.42 -2.7 0.181 17.3 25.7 820 10.7 --
377.8 0.905 6.29 0.326 2.65 2.25 2.67 -- -0.0133 16.9 25.8 802 11.6 --
370.75 0.897 6.24 0.657 2.8 2.43 -- -3.16 0.142 17.3 25.8 826 10.7 --
394.73 0.925 6.33 0.289 3 2.45 -- -- -0.126 17.4 26.37 853 9.91 --
502.48 1.04 6.37 0.208 -- 3.09 -- -2.83 -0.876 -- 34.76 1492 11.5 --
489.77 1.04 6.41 -0.374 2.01 -- 2.94 -- -0.551 17.5 -- -- -- --
509.39 1.06 6.4 -0.388 2.04 -- -- -- -0.54 17.8 -- -- -- --
463.25 1 6.4 -0.164 -- 3.19 -- -- -0.726 -- 34.88 1499 12.4 --
392.7 0.923 6.31 -- 3.04 2.39 -- -- -0.0663 17.5 26.21 840 10 --
724.2 1.26 6.37 -0.451 -- -- -- -- -0.588 -- -- -- -- --
513.36 1.06 6.39 -- 2.04 -- -- -- -0.497 17.8 -- -- -- --
463.86 1 6.39 -- -- 3.21 -- -- -0.683 -- 34.9 1499 12.5 --
729.56 1.26 6.36 -- -- -- -- -- -0.538 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 368.97 temperature 25 720 < th dose independent rect. 13 10
21 376.80 temperature 25 720 < th dose independent sin 17 NA
31 380.24 temperature 30 720 < th dose dependent rect. 15 6
33 380.30 temperature 30 720 < th dose dependent rect. 15 8
39 381.28 temperature 10 720 > th dose dependent rect. 15 8
75 385.30 temperature 10 720 > th dose dependent rect. 13 9
134 391.61 temperature 30 30 < th dose dependent sin 12 NA
151 392.65 temperature 30 270 < th dose dependent sin 14 NA
168 393.83 temperature 25 720 > th dose independent rect. 15 7
175 394.35 temperature 30 720 < th dose dependent sin 18 NA
181 394.70 temperature 25 720 > th dose independent rect. 13 10
189 394.94 temperature 10 720 > th dose dependent sin 17 NA
210 395.91 temperature 10 720 > th dose dependent rect. 11 14
211 395.96 temperature 30 10 < th dose dependent rect. 14 14
280 398.63 temperature 10 30 > th dose dependent sin 11 NA
309 399.70 temperature 10 270 > th dose dependent sin 13 NA
344 401.01 temperature 25 720 > th dose dependent sin 14 NA
358 401.63 temperature 25 720 > th dose dependent rect. 15 13
399 402.83 temperature 25 720 > th dose independent sin 17 NA
490 405.13 temperature 25 10 < th dose dependent rect. 12 22
547 406.30 temperature 25 10 < th dose dependent rect. 14 20
615 407.35 temperature 15 270 > th dose dependent rect. 17 13
660 407.77 temperature 25 10 < th dose dependent rect. 6 22
822 410.13 temperature 25 10 < th dose dependent rect. 9 23
826 410.16 temperature 25 10 < th dose dependent rect. 17 23
827 410.20 temperature 25 10 < th dose dependent no NA NA
831 410.25 temperature 25 10 < th dose dependent rect. 19 23
844 410.39 temperature 25 10 < th dose dependent rect. 3 23
848 410.45 temperature 25 10 < th dose dependent rect. 21 23
877 410.75 temperature 25 10 < th dose dependent rect. 23 23
907 411.05 radiation 1 720 < th dose independent rect. 8 16