Os02g0175600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L27a (Fragment).
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Os02g0175600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 60S ribosomal protein L27a (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 81.07 | 0.423 | 13.1 | 0.329 | 0.792 | 1.5 | 0.792 | 0.471 | 0.231 | 17.5 | 20.5 | 1379 | -- | -- |
| 81.33 | 0.42 | 13.1 | 0.24 | 0.78 | 1.46 | 0.802 | -- | 0.213 | 17.6 | 20.5 | 1472 | -- | -- |
| 82.54 | 0.423 | 13.1 | 0.313 | 0.799 | 1.5 | -- | 0.413 | 0.23 | 17.3 | 20.59 | 1353 | -- | -- |
| 82.88 | 0.424 | 13.1 | 0.228 | 0.788 | 1.47 | -- | -- | 0.21 | 17.5 | 20.52 | 1465 | -- | -- |
| 113.28 | 0.496 | 13.1 | 0.201 | -- | 1.5 | -- | 0.181 | 0.184 | -- | 20.6 | 1785 | -- | -- |
| 127.58 | 0.53 | 13 | 0.843 | 0.75 | -- | 1.08 | -- | 0.538 | 17.8 | -- | -- | -- | -- |
| 130.4 | 0.535 | 13 | 0.837 | 0.756 | -- | -- | -- | 0.543 | 17.6 | -- | -- | -- | -- |
| 113.36 | 0.496 | 13.1 | 0.167 | -- | 1.47 | -- | -- | 0.181 | -- | 20.59 | 1785 | -- | -- |
| 84.05 | 0.427 | 13.1 | -- | 0.798 | 1.54 | -- | -- | 0.162 | 17.5 | 20.5 | 1469 | -- | -- |
| 160.11 | 0.591 | 13 | 0.813 | -- | -- | -- | -- | 0.525 | -- | -- | -- | -- | -- |
| 148.87 | 0.571 | 13 | -- | 0.743 | -- | -- | -- | 0.45 | 17.6 | -- | -- | -- | -- |
| 113.96 | 0.497 | 13.1 | -- | -- | 1.54 | -- | -- | 0.158 | -- | 20.6 | 1789 | -- | -- |
| 177.53 | 0.622 | 13 | -- | -- | -- | -- | -- | 0.434 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 78.36 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 7 | 78.75 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 37 | 79.50 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 67 | 80.01 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 166 | 81.09 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 200 | 81.41 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 210 | 81.52 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 235 | 81.72 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 353 | 82.47 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 387 | 82.64 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 407 | 82.78 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 494 | 83.28 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 513 | 83.45 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 522 | 83.51 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 557 | 83.73 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 21 |
| 568 | 83.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 608 | 84.03 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 611 | 84.07 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 613 | 84.08 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 619 | 84.11 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 10 |
| 645 | 84.24 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 14 |
| 704 | 84.49 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 713 | 84.53 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 717 | 84.55 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 743 | 84.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 834 | 85.12 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 872 | 85.27 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 884 | 85.30 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 885 | 85.30 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 933 | 85.49 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 8 |
| 968 | 85.61 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 9 |
| 993 | 85.67 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 12 |