Os02g0174900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os02g0174900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 138.48 | 0.553 | 4.48 | 0.427 | 0.174 | -2.85 | -0.0482 | -6.59 | 0.546 | 19.4 | 20.67 | 5526 | -- | -- |
| 152.47 | 0.575 | 4.69 | 0.187 | 0.159 | -0.589 | -0.259 | -- | 0.426 | 18.9 | 22.73 | 3891 | -- | -- |
| 138.15 | 0.547 | 4.44 | 0.324 | 0.182 | -4 | -- | -9.04 | 0.552 | 19.4 | 19.59 | 5533 | -- | -- |
| 150.06 | 0.571 | 4.65 | 0.351 | 0.175 | -0.533 | -- | -- | 0.511 | 19.3 | 33.79 | 2959 | -- | -- |
| 139.61 | 0.55 | 4.44 | 0.311 | -- | -3.96 | -- | -8.96 | 0.55 | -- | 19.7 | 6142 | -- | -- |
| 155.49 | 0.585 | 4.63 | 0.563 | 0.165 | -- | -0.174 | -- | 0.618 | 20.4 | -- | -- | -- | -- |
| 155.55 | 0.584 | 4.63 | 0.569 | 0.169 | -- | -- | -- | 0.619 | 19.9 | -- | -- | -- | -- |
| 151.46 | 0.573 | 4.65 | 0.33 | -- | -0.57 | -- | -- | 0.507 | -- | 50.39 | 3564 | -- | -- |
| 152.51 | 0.575 | 4.66 | -- | 0.156 | -0.716 | -- | -- | 0.454 | 18.6 | 45.99 | 3832 | -- | -- |
| 157.1 | 0.586 | 4.62 | 0.568 | -- | -- | -- | -- | 0.617 | -- | -- | -- | -- | -- |
| 164.09 | 0.599 | 4.64 | -- | 0.166 | -- | -- | -- | 0.556 | 20.1 | -- | -- | -- | -- |
| 153.7 | 0.577 | 4.66 | -- | -- | -0.734 | -- | -- | 0.447 | -- | 53.55 | 3617 | -- | -- |
| 165.6 | 0.601 | 4.64 | -- | -- | -- | -- | -- | 0.554 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 138.84 | humidity | 50 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 3 | 138.90 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 4 | 138.92 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 6 | 138.94 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 8 | 138.95 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 10 | 138.97 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 12 | 138.98 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 23 | 139.04 | humidity | 50 | 14400 | < th | dose independent | rect. | 12 | 2 |
| 30 | 139.08 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 40 | 139.12 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 49 | 139.15 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 13 | 2 |
| 57 | 139.17 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 64 | 139.18 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 13 | 2 |
| 66 | 139.18 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 12 | 4 |
| 68 | 139.19 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 12 | 3 |
| 85 | 139.20 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 20 | 18 |
| 127 | 139.25 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 21 | 17 |
| 210 | 139.33 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 8 | 16 |
| 295 | 139.37 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 352 | 139.40 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 10 | NA |
| 383 | 139.41 | atmosphere | 1015 | 43200 | < th | dose independent | no | NA | NA |
| 414 | 139.42 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 2 |
| 465 | 139.44 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 470 | 139.45 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 7 | NA |
| 577 | 139.49 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 594 | 139.50 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 15 | 5 |
| 705 | 139.55 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 8 | 19 |
| 750 | 139.57 | atmosphere | 1015 | 43200 | > th | dose independent | no | NA | NA |
| 772 | 139.57 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 2 | 22 |
| 810 | 139.59 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 862 | 139.61 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 914 | 139.62 | atmosphere | 1015 | 43200 | > th | dose dependent | sin | 5 | NA |
| 938 | 139.63 | wind | 3 | 14400 | < th | dose dependent | rect. | 6 | 1 |