Os02g0174700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0174700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.28 | 0.368 | 8.83 | -1.18 | 0.814 | -0.78 | -0.299 | -0.184 | 0.179 | 23.1 | 1010 | 4424 | -- | -- |
| 61.4 | 0.365 | 8.84 | -1.2 | 0.815 | -0.766 | -0.272 | -- | 0.176 | 23 | 1010 | 4395 | -- | -- |
| 61.66 | 0.366 | 8.83 | -1.17 | 0.816 | -0.782 | -- | -0.195 | 0.18 | 23 | 1010 | 4432 | -- | -- |
| 61.76 | 0.366 | 8.84 | -1.21 | 0.815 | -0.77 | -- | -- | 0.172 | 23 | 1010 | 4400 | -- | -- |
| 102.92 | 0.472 | 8.81 | -1.16 | -- | -0.839 | -- | -0.123 | 0.21 | -- | 1009 | 3807 | -- | -- |
| 77.87 | 0.414 | 8.8 | -1.02 | 0.815 | -- | -0.311 | -- | 0.322 | 23.2 | -- | -- | -- | -- |
| 78.28 | 0.414 | 8.8 | -1.01 | 0.817 | -- | -- | -- | 0.323 | 23.2 | -- | -- | -- | -- |
| 102.92 | 0.472 | 8.81 | -1.18 | -- | -0.828 | -- | -- | 0.22 | -- | 1009 | 3791 | -- | -- |
| 97.52 | 0.46 | 8.8 | -- | 0.802 | -0.558 | -- | -- | 0.357 | 23 | 1011 | 3772 | -- | -- |
| 119.92 | 0.512 | 8.78 | -0.989 | -- | -- | -- | -- | 0.33 | -- | -- | -- | -- | -- |
| 105.07 | 0.479 | 8.78 | -- | 0.807 | -- | -- | -- | 0.435 | 23.1 | -- | -- | -- | -- |
| 137.44 | 0.546 | 8.78 | -- | -- | -0.59 | -- | -- | 0.358 | -- | 1010 | 3684 | -- | -- |
| 145.7 | 0.563 | 8.76 | -- | -- | -- | -- | -- | 0.44 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.58 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 19 | 14 |
| 2 | 59.64 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 3 | 59.99 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 4 | 59.99 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 5 | 60.12 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 6 | 60.15 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 16 | 22 |
| 7 | 60.17 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 9 | 60.24 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 20 | 3 |
| 12 | 60.28 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 11 | 22 |
| 16 | 60.29 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 11 | 7 |
| 33 | 60.34 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 10 | 5 |
| 35 | 60.35 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 8 | 6 |
| 71 | 60.38 | humidity | 50.0 | 14400 | < th | dose dependent | sin | 3 | NA |
| 76 | 60.39 | humidity | 50.0 | 14400 | < th | dose dependent | sin | 1 | NA |
| 111 | 60.47 | humidity | 50.0 | 14400 | < th | dose dependent | no | NA | NA |
| 113 | 60.47 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 8 | 10 |
| 299 | 60.56 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 10 | 2 |
| 303 | 60.60 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 24 | 1 |
| 308 | 60.61 | radiation | 10.0 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 344 | 60.72 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 345 | 60.72 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 367 | 60.78 | radiation | 10.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 368 | 60.78 | radiation | 10.0 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 392 | 60.83 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 416 | 60.91 | atmosphere | 1010.0 | 4320 | > th | dose dependent | sin | 14 | NA |
| 433 | 60.97 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 434 | 60.97 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 499 | 61.14 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 500 | 61.14 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 522 | 61.17 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 539 | 61.18 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 6 | 20 |
| 577 | 61.24 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 578 | 61.24 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 591 | 61.26 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 651 | 61.31 | atmosphere | 1010.0 | 4320 | > th | dose dependent | no | NA | NA |
| 660 | 61.32 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 664 | 61.32 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 669 | 61.32 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 1 | 23 |
| 692 | 61.36 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 16 | 14 |
| 698 | 61.38 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 722 | 61.39 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 22 | 23 |
| 791 | 61.51 | atmosphere | 1010.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 810 | 61.52 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 5 |
| 844 | 61.57 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 846 | 61.57 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 894 | 61.61 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 14 | 4 |
| 900 | 61.61 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 7 |
| 930 | 61.64 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 13 | 17 |
| 941 | 61.66 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 8 | 5 |
| 958 | 61.66 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 16 | 8 |
| 971 | 61.67 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 17 | 13 |