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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0174500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.47 (0.0233) R2 : 0.00209
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0479 (0.049) R2dN8 : 0.0027 R2N8 : 0.00209
σ : 0.438
deviance : 88.08
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
81.37 0.424 3.44 0.0133 0.15 -0.381 -0.559 0.0604 0.0486 5.57 21.4 2624 -- --
81.38 0.42 3.44 0.00129 0.152 -0.387 -0.566 -- 0.049 5.57 21.43 2623 -- --
82.1 0.422 3.44 0.016 0.147 -0.369 -- 0.0842 0.0551 5.05 21.6 2616 -- --
82.09 0.422 3.44 -0.0366 0.149 -0.354 -- -- 0.051 5.16 22.02 2695 -- --
83.22 0.425 3.44 0.00883 -- -0.347 -- 0.121 0.0528 -- 21.75 2325 -- --
85.44 0.433 3.47 -0.196 0.136 -- -0.535 -- -0.0748 5.97 -- -- -- --
86.14 0.435 3.47 -0.201 0.133 -- -- -- -0.0729 5.72 -- -- -- --
83.19 0.425 3.44 0.0177 -- -0.375 -- -- 0.0601 -- 21.67 3675 -- --
82.11 0.422 3.44 -- 0.149 -0.369 -- -- 0.0565 5.15 21.94 2696 -- --
87.06 0.436 3.47 -0.197 -- -- -- -- -0.0698 -- -- -- -- --
87.2 0.437 3.47 -- 0.13 -- -- -- -0.0505 5.79 -- -- -- --
83.19 0.425 3.45 -- -- -0.364 -- -- 0.0554 -- 22 3644 -- --
88.08 0.438 3.47 -- -- -- -- -- -0.0479 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 80.29 atmosphere 1015 14400 > th dose dependent rect. 18 6
5 80.29 temperature 15 30 > th dose dependent rect. 3 22
8 80.31 atmosphere 1015 14400 > th dose dependent rect. 23 1
23 80.35 temperature 25 720 < th dose independent rect. 23 1
28 80.37 wind 9 14400 > th dose independent rect. 16 1
67 80.43 temperature 20 30 > th dose independent rect. 3 22
68 80.43 atmosphere 1015 14400 > th dose dependent sin 15 NA
82 80.45 atmosphere 1015 43200 > th dose dependent rect. 2 2
99 80.48 wind 9 720 < th dose independent rect. 3 8
100 80.48 atmosphere 1015 14400 > th dose independent rect. 14 10
105 80.49 temperature 20 720 > th dose independent rect. 3 1
107 80.49 temperature 20 720 > th dose dependent rect. 3 1
111 80.50 atmosphere 1015 14400 > th dose independent rect. 17 4
129 80.51 wind 5 14400 < th dose independent rect. 11 1
153 80.53 atmosphere 1015 720 < th dose independent rect. 3 8
165 80.54 atmosphere 1015 14400 > th dose independent sin 17 NA
168 80.54 atmosphere 1015 14400 < th dose independent rect. 15 8
178 80.54 atmosphere 1015 14400 > th dose dependent rect. 5 20
179 80.54 atmosphere 1015 14400 > th dose dependent rect. 7 20
207 80.55 atmosphere 1015 14400 > th dose independent rect. 11 13
219 80.55 atmosphere 1015 14400 > th dose dependent no NA NA
225 80.55 atmosphere 1015 14400 > th dose dependent rect. 7 17
248 80.55 atmosphere 1015 14400 > th dose dependent rect. 22 22
266 80.56 atmosphere 1015 14400 < th dose independent sin 17 NA
324 80.57 atmosphere 1015 14400 < th dose independent rect. 9 14
365 80.58 humidity 70 14400 > th dose independent rect. 8 1
366 80.58 atmosphere 1015 14400 < th dose independent rect. 17 4
372 80.58 atmosphere 1015 14400 > th dose independent rect. 6 14
403 80.58 atmosphere 1015 14400 > th dose dependent sin 0 NA
405 80.58 atmosphere 1015 14400 > th dose dependent rect. 6 12
407 80.58 atmosphere 1015 14400 > th dose dependent rect. 5 14
427 80.59 wind 9 14400 < th dose independent rect. 16 1
428 80.59 humidity 70 14400 < th dose independent rect. 8 1
433 80.59 atmosphere 1015 14400 > th dose independent rect. 8 8
438 80.59 atmosphere 1015 14400 < th dose independent rect. 7 11
475 80.59 atmosphere 1015 14400 > th dose dependent rect. 8 6
476 80.59 atmosphere 1015 14400 > th dose dependent rect. 7 8
504 80.60 atmosphere 1015 14400 < th dose independent rect. 11 2
506 80.60 atmosphere 1015 14400 > th dose independent rect. 9 6
508 80.60 atmosphere 1015 14400 < th dose independent rect. 9 7
559 80.61 atmosphere 1015 14400 > th dose independent rect. 10 4
560 80.61 atmosphere 1015 14400 < th dose independent rect. 10 4
606 80.61 atmosphere 1015 14400 > th dose dependent rect. 9 4
660 80.62 atmosphere 1015 14400 > th dose dependent rect. 10 1
670 80.63 atmosphere 1015 14400 > th dose independent rect. 11 2
854 80.67 atmosphere 1015 14400 > th dose independent no NA NA
856 80.67 atmosphere 1015 14400 < th dose independent no NA NA
871 80.67 wind 1 14400 < th dose dependent rect. 6 1
916 80.69 atmosphere 1015 14400 < th dose independent rect. 15 23
920 80.70 humidity 70 14400 > th dose independent rect. 4 5
953 80.71 humidity 70 14400 > th dose independent rect. 1 8
964 80.71 humidity 80 14400 < th dose dependent rect. 3 6
983 80.72 humidity 70 14400 > th dose independent rect. 22 11